Pinned Repositories
C_californicus_Morphology
Ccalifornicus_Venom-Microbiome
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline for public benefit and usage.
ClinGen-Bot_GeneWikiCentral-Issue116
This automated bot retrieves gene-disease validity data from ClinGen and integrates it into Wikidata as 'genetic association' statements for both gene and disease item pages on a weekly basis.
ivamp-consortium.github.io
This is the Initiative for Venom Associated Microbes and Parasites (iVAMP) website and database. To join, subscribe to our listserv (ivamp@googlegroups.com).
Nobile-HerndayLabs_BioinformaticsWorkshop_Feb19-2019
This is for an introduction tutorial on bioinformatics tailored to Nobile and Hernday lab members.
Puerto-Nuevo_Coastal-Microbial-Ecology_16S-18S-Workflow_UlHasan-etal
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
q2_metabolomicsgnps
scheduled-bots
GeneWiki Scheduled Bots
UCSD-PADG
Fall 2022 UCSD Extension Course (167347 Processing Actionable Data in Genomics)
WRP
Wikidata Repurposing Portal
sabahzero's Repositories
sabahzero/Nobile-HerndayLabs_BioinformaticsWorkshop_Feb19-2019
This is for an introduction tutorial on bioinformatics tailored to Nobile and Hernday lab members.
sabahzero/Ccalifornicus_Venom-Microbiome
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline for public benefit and usage.
sabahzero/C_californicus_Morphology
sabahzero/ClinGen-Bot_GeneWikiCentral-Issue116
This automated bot retrieves gene-disease validity data from ClinGen and integrates it into Wikidata as 'genetic association' statements for both gene and disease item pages on a weekly basis.
sabahzero/dataviz
Data and Research Visualization Workshops
sabahzero/ivamp
This is the beta version of the Initiative for Venom Associated Microbes and Parasites (iVAMP). To join, subscribe to our listserv (ivamp@googlegroups.com). We've re-located
sabahzero/ivamp-consortium.github.io
This is the Initiative for Venom Associated Microbes and Parasites (iVAMP) website and database. To join, subscribe to our listserv (ivamp@googlegroups.com).
sabahzero/Lesson-Plan_RNA-Seq
sabahzero/metapaths
Augmenting a network to find metapaths that capture a Drugs MoA
sabahzero/Puerto-Nuevo_Coastal-Microbial-Ecology_16S-18S-Workflow_UlHasan-etal
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
sabahzero/PythonPractice
sabahzero/q2_metabolomicsgnps
sabahzero/scheduled-bots
GeneWiki Scheduled Bots
sabahzero/sparkwdsub
Spark processing of wikidata subsets
sabahzero/SuLab-Projects
Su Lab Research Items at Scripps Research
sabahzero/ToxiconX_Correspondence
sabahzero/UCMerced_DataCarpentry
This is a respository of Data Carpentry workshop notes over the years of baby scientist life.
sabahzero/UCSD-PADG
Fall 2022 UCSD Extension Course (167347 Processing Actionable Data in Genomics)
sabahzero/WD-rephetio-analysis
sabahzero/wdsub
Wikidata Subsetting
sabahzero/wikibase-dump-filter
Filter and format a newline-delimited JSON stream of Wikibase entities
sabahzero/WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint
sabahzero/WikiGenomesBase
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
sabahzero/writing-cleaner-code
sabahzero/WRP
Wikidata Repurposing Portal
sabahzero/R-outbreak-info
R package to access the genomics and epidemiology data compiled and standardized on outbreak.info.
sabahzero/SAF-Lux
Software for Shared Authority File - Luxembourgh
sabahzero/SemaTyP
The source code and data of our paper: "SemaTyP: a knowledge graph based literature mining method for drug discovery"