sabiqali
Bioinformatician at PanCuRx at OICR. Ex-Programmer in the Simpson lab at OICR. UofT Computer Engineering Graduate. Part-Time Tinkerer.
Ontario Institute for Cancer ResearchToronto
Pinned Repositories
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
align
Sequence Alignment and Scoring
align_pipeline
A pipeline of scripts to be used before using Align to align the reads
bioconda-recipes
Conda recipes for the bioconda channel.
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
canu
A single molecule sequence assembler for genomes large and small.
ece1718s1
strcount
Tandem Repeat expansion counter
strline
STR Detection and Counting Pipelines
sabiqali's Repositories
sabiqali/strline
STR Detection and Counting Pipelines
sabiqali/align
Sequence Alignment and Scoring
sabiqali/strcount
Tandem Repeat expansion counter
sabiqali/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
sabiqali/align_pipeline
A pipeline of scripts to be used before using Align to align the reads
sabiqali/bioconda-recipes
Conda recipes for the bioconda channel.
sabiqali/Complete-Striped-Smith-Waterman-Library
sabiqali/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
sabiqali/fletcher
Fletcher: A framework to integrate FPGA accelerators with Apache Arrow
sabiqali/helper_tools
Helper Tools in developmment for bigger tools
sabiqali/mean
MEAN.JS - Full-Stack JavaScript Using MongoDB, Express, AngularJS, and Node.js -
sabiqali/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
sabiqali/modbamplots
Scripts to plot Methylation from Modbams
sabiqali/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sabiqali/MyProfile
sabiqali/myprofile-arch
sabiqali/nanopolish
Signal-level algorithms for MinION data
sabiqali/nanopore-SV-analysis
Structural variant filtering and anlaysis of Nanopore human WGS data.
sabiqali/NextflowModules
UMCU Genetics Nextflow modules
sabiqali/pipeline_nextflow
Analysis pipeline in Nextflow
sabiqali/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sabiqali/sabiqali
Config files for my GitHub profile.
sabiqali/sabiqchaudhary.github.io
sabiqali/strdisc
STR Discovery Pipeline for Nanopore Reads
sabiqali/STRErrorRateCalc
To calculate the sequencing error rates of known STR loci
sabiqali/strtoolkit
sabiqali/strview
A small tool to elaborate upon alignments between the read and reference around the STR region
sabiqali/test_data_distribution
test data distribution
sabiqali/vg
tools for working with genome variation graphs
sabiqali/WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment