Pinned Repositories
diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
biopython
Official git repository for Biopython (converted from CVS)
conda-forge.github.io
Documentation for conda-forge
diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures
exome-results-browsers
Results browsers for case-control studies of psychiatric diseases done at the Broad Institute
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
scripts
Various scripts for various projects
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
sachalau's Repositories
sachalau/bioconda-recipes
Conda recipes for the bioconda channel.
sachalau/bioconda-utils
Utilities for building and managing bioconda recipes
sachalau/biopython
Official git repository for Biopython (converted from CVS)
sachalau/conda-forge.github.io
Documentation for conda-forge
sachalau/diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures
sachalau/exome-results-browsers
Results browsers for case-control studies of psychiatric diseases done at the Broad Institute
sachalau/gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
sachalau/scripts
Various scripts for various projects
sachalau/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
sachalau/genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
sachalau/gnomad-browser
JavaScript tools for exploring genomic data
sachalau/gnomad-browser-toolkit
A collection of reusable components and tools for building genomic data browsers
sachalau/jbrowse
A modern genome browser built with JavaScript and HTML5.
sachalau/miscperlscripts
Small collection of random useful perl scripts
sachalau/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
sachalau/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
sachalau/Mykrobe-predictor
Antibiotic resistance predictions in minutes on a laptop
sachalau/nettle-feedstock
A conda-smithy repository for nettle.
sachalau/r-animation-feedstock
A conda-smithy repository for r-animation.
sachalau/ReSeqWho
sachalau/rnaSEQ
sachalau/SnpEff
sachalau/teleost-radiation
Scripts for the analysis of diversification rates after whole genome duplication in teleost
sachalau/testing-workflows
sachalau/UVP
Mycobacterium tuberculosis next generation sequence analysis
sachalau/who-analysis
Code used for WHO analysis work