sachitsaksena

FactorizableLibrary

Code and data for factorizable libraries

prescient

Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.

prescient-analysis

Notebooks for pre-processing, analysis, and visualization of PRESCIENT applied to in vitro hematopoeisis (Weinreb et al. 2020) and in vitro beta-cell differentiation (Veres et al. 2019).

magic

Tool to identify monoallelic expression in polyclonal samples using ChIP-Seq data.

cycada_release

Code to accompany ICML 2018 paper

devenv

Personal developer environments

kunjapurdb

Example laboratory information system for synthetic biology strain/sequence management.

nfkb-tag-seq

Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.

sachitsaksena.github.io

Personal website hosted at: sachitsaksena.github.io. Blog posts by Jekyll. Custom layout using Tachyons CSS toolkit.

SeqGAN

Implementation of Sequence Generative Adversarial Nets with Policy Gradient

sachitsaksena/nfkb-tag-seq

Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.

sachitsaksena/sachitsaksena.github.io

Personal website hosted at: sachitsaksena.github.io. Blog posts by Jekyll. Custom layout using Tachyons CSS toolkit.

sachitsaksena/SeqGAN

Implementation of Sequence Generative Adversarial Nets with Policy Gradient

sachitsaksena/cycada_release

Code to accompany ICML 2018 paper

sachitsaksena/devenv

Personal developer environments

sachitsaksena/kunjapurdb

Example laboratory information system for synthetic biology strain/sequence management.

sachitsaksena/mit6874-2020

sachitsaksena/optical_flow

sachitsaksena/optical_flow2

Optical Flow with OpevCV from scratch

sachitsaksena/population-diffusions

Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"

sachitsaksena/SGW

Code for Sliced Gromov-Wasserstein

sachitsaksena/splice

Predict exon skipping from CRISPR/Cas9 targeting of splice acceptor sites.

sachitsaksena/velocyto.py

RNA velocity estimation in Python

sachitsaksena/wot

A software package for analyzing snapshots of developmental processes