sachiwije
PhD Student and research assistant working on Buruli ulcer and malaria using computational and wet-lab techniques.
Deakin University, WEHI, Burnet InstituteMelbourne
Pinned Repositories
AFL_fitzRoy
cpp-527-spr-2020
Course shell for CPP 527 Foundations of Data Science II for Spring 2020.
DGE_workshop_salmon_online
docker
Ev1_SelectionMetaAnalysis
Vignette and research project developed under the AES ERC Networking Grant Scheme and the GSA workshop support scheme.
installing_windows
Documenting how I installed windows and removed linux
inStrain
Bioinformatics program inStrain
intro-to-bioinfo
COMBINE Australia Introduction to bioinformatics workshop
kraken2
The second version of the Kraken taxonomic sequence classification system
sachiwije's Repositories
sachiwije/AFL_fitzRoy
sachiwije/cpp-527-spr-2020
Course shell for CPP 527 Foundations of Data Science II for Spring 2020.
sachiwije/DGE_workshop_salmon_online
sachiwije/docker
sachiwije/Ev1_SelectionMetaAnalysis
Vignette and research project developed under the AES ERC Networking Grant Scheme and the GSA workshop support scheme.
sachiwije/installing_windows
Documenting how I installed windows and removed linux
sachiwije/inStrain
Bioinformatics program inStrain
sachiwije/intro-to-bioinfo
COMBINE Australia Introduction to bioinformatics workshop
sachiwije/kraken2
The second version of the Kraken taxonomic sequence classification system
sachiwije/metagenomics
Metagenomica
sachiwije/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
sachiwije/MU_human_genomic_analysis
Orignal: Genomic analysis of mosquito, possum and human derived M. ulcerans genomes
sachiwije/nextflow-nf-core-practise-
sachiwije/Probe_Finder
This is to design probes (minimalist approach) for Plasmodium falciparum to be used in Probe Capture Enrichment before Next Generation Sequencing.
sachiwije/pycalcu
A simple string based calculator
sachiwije/RNA-seq-workshop
sachiwije/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
sachiwije/Shotgun-Metagenomics-Analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
sachiwije/sm-SNIPER
A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms
sachiwije/swga
Select primer sets for selective whole genome amplification (SWGA)
sachiwije/tidytuesday
sachiwije/trackplot
Generate IGV style locus tracks from bigWig files in R