- A bash script with your StringTie v2 and Tablemaker commands.
- An R script with your Ballgown commands.
- The first 1000 lines of both GTF files generated using StringTie2.
- The first 1000 lines of the FPKM matrix produced by Ballgown, saved as a csv.
To reproduce the code
- Open a Binder JupyterLab Session:
- Open a terminal
- Run the Code
bash Code.sh
