saigerutherford

100-Days-Of-ML-Code

100 Days of ML Coding

anatomically_defined_CNNs

Data & code for OHBM 2019 Deep Learning Educational Course "Revamped CNNs for Brains"

CIFTI_fmri_workflow

Scripts I have used to get UMich data into BIDS format, preprocessed through fMRIPrep to get CIFTI-space output data, then run task data through HCP task scripts.

CPC_ML_tutorial

Code & Data for Computational Psychiatry Course Tutorial on Machine Learning

CQH-Dimensional-Phenotyper

fetal-code

Automated Preprocessing Pipeline for Fetal Resting-State fMRI Data

introduction-to-python

A brief overview of the Python programming language.

PCNtoolkit-demo

Demo and tutorial for PCNtoolkit routines

python-matlab-bridge

A simple Python => MATLAB(R) interface and a matlab_magic for ipython

WhistlerPoster2020

Code for all analyses on my poster (Linear vs. Deep Learning for Prediction from Brain Images) presented at the Whistler 2020 conference.

saigerutherford/CPC_ML_tutorial

Code & Data for Computational Psychiatry Course Tutorial on Machine Learning

saigerutherford/fetal-code

Automated Preprocessing Pipeline for Fetal Resting-State fMRI Data

saigerutherford/introduction-to-python

A brief overview of the Python programming language.

saigerutherford/WhistlerPoster2020

Code for all analyses on my poster (Linear vs. Deep Learning for Prediction from Brain Images) presented at the Whistler 2020 conference.

saigerutherford/PCNtoolkit-demo

Demo and tutorial for PCNtoolkit routines

saigerutherford/anatomically_defined_CNNs

Data & code for OHBM 2019 Deep Learning Educational Course "Revamped CNNs for Brains"

saigerutherford/elife_braincharts_interactive

Code and data to turn https://elifesciences.org/articles/72904 into an interactive article

saigerutherford/PCNtoolkit

Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

saigerutherford/CIFTI_fmri_workflow

Scripts I have used to get UMich data into BIDS format, preprocessed through fMRIPrep to get CIFTI-space output data, then run task data through HCP task scripts.

saigerutherford/bigdata-stuttering

Code to reproduce analysis from https://www.biorxiv.org/content/10.1101/2020.10.28.359711v1.abstract

saigerutherford/bisweb

This is the repository for the BioImage Suite Web Project

saigerutherford/brainviz-app

saigerutherford/ClubCurriculum

Curriculum for our weekly club

saigerutherford/confounds

Conquering confounds and covariates in machine learning

saigerutherford/digital_labnotebook_tutorial

Version control with git tutorial.

saigerutherford/doxygen

Official doxygen git repository

saigerutherford/evidence_embracing_nm

Analysis code for the paper "Evidence for Embracing Normative Modeling"

saigerutherford/granular-race-disparities_MLHC23

Code for "Coarse race data conceals disparities in clinical risk score performance," published at MLHC 2023

saigerutherford/lifespan_qc_scripts

Scripts used to manually check subjects T1w volumes with Freesurfer brain.finalsurfs viewed as an overlay.

saigerutherford/Matlab_ASL_repo

Code for analyzing perfusion FMRI data collected with ASL

saigerutherford/nm_demographics

Analysis for quantifying differences in deviation scores across demographic groups

saigerutherford/NormativeModeling_SpringerNature

The repository for the chapter about Normative Modeling in “Methods for analyzing large neuroimaging datasets” by Springer Nature.

saigerutherford/PCNportal

Web interface for PCN toolkit

saigerutherford/PCNtoolkit-interface

Code for PCNtoolkit's online presence aka live inference machine

saigerutherford/precourse-preparation

saigerutherford/pybliometrics

Python-based API-Wrapper to access Scopus

saigerutherford/SAD_analysis

Code for social anxiety disorder paper with UMich PI Liz Duval

saigerutherford/saigerutherford

saigerutherford/sz_social_cognition

saigerutherford/Wishart-priored-SDE