/learn-multibody-dynamics

Interactive computational book on multibody dynamics

Primary LanguagePythonOtherNOASSERTION

README

This repository containts the source for the website Learn Multibody Dynamics.

License

The contents of this repository are licensed under the CC-BY 4.0 license. See license.rst for more information.

Building the Website

Clone the repository:

git clone https://github.com/moorepants/learn-multibody-dynamics.git
cd learn-multibody-dynamics

Install miniconda or Anaconda and create a conda environment for the book:

conda env create -f multibody-book-env.yml

Activate the conda environment:

conda activate multibody-book

To build the website run:

make html

When complete, the website is then viewable in your browser:

<yourbrowser> _build/html/index.html

You can also run sphinx-autobuild (updates while while you edit) with:

make autobuild

If you want to build one of the branches (for example a pull request), you'll need to fetch and checkout the branch. First fetch down all the branches:

git fetch origin

Then checkout the branch (this command is only need the first time you check it out):

git checkout -b branch-name origin/branch-name

The branch name is listed on the pull request just under the title "...wants to merge X commits into master from branch-name." Or you can find all branches here: https://github.com/moorepants/learn-multibody-dynamics/branches

Now run:

make clean
make html

The make clean makes sure you don't keep any remnants from prior builds around before building the new branch.

After you have a new branch setup you can switch between the master branch and any branch name with just:

git checkout master
git checkout branch-name

If the master branch or any other branch has been updated on github you can pull down the latest changes with:

git checkout branch-name
git pull origin branch-name

Editing Guide

restructuredtext

The text is written in reStructuredText and processed with Sphinx. The Sphinx reStructuredText documentation page is a good starting point to learn the syntax.

reStructuredText doesn't enforce a specific heading order, but this should be followed for this text:

=======
Chapter
=======

Section
=======

Subsection
----------

Subsubsection
^^^^^^^^^^^^^

Autoreferencing is enabled so the above sections can be referenced with:

:ref:`Chapter`
:ref:`Section`
:ref:`Subsection`
:ref:`Subsubsection`

For equations and figures, they need to be manually labeled for numbered referencing. Use these patterns:

:label:`eq-my-equation-name`
:math:numref:`eq-my-equation-name`

.. _fig-my-figure-name:
:numref:`fig-my-figure-name`

jupyer-sphinx

We use jupyter-sphinx to transform each page with code cells into a Jupyter Notebook and Python script. Any page that includes .. jupyter-execute:: directives will be processed in this way. The documentation for jupyter-sphinx is here:

https://jupyter-sphinx.readthedocs.io

Xournal++

I draw the figures, one per page, in Xournal++. The I export as -> svg -> choose None for background and "current page" to get a single exported svg.

The SVG figures should be cropped to the bounding box of the drawn elements. One can do so using Inkscape with these button presses: File -> Document Properties -> Resize Page to Content. With Inkscape > 1.0 this command will crop the figure:

inkscape --export-type=svg --export-area-drawing ./my-figure.svg

Live rebuilding with sphinx-autobuild

Sphinx autobuild is a pretty good way to get almost instaneous rendered HTML versions of the reStructuredText file. You can open a window with your text editor and a window with your broswer side-by-side for almost instant feedback on the formatting and Jupyter code execution.

sphinx-autobuild -b html . _build/html/

This is also encoded in the Makefile:

make autobuild

Execute code cells in IPython while writing

tmux

https://tmuxcheatsheet.com/

https://medium.com/hackernoon/a-gentle-introduction-to-tmux-8d784c404340

tmux new
<Ctrl>+b %  # side by side panes
<Ctrl>+<arrow key>  # jump between panes

vim-slime

https://github.com/jpalardy/vim-slime

create a vim slime config file for rst

<Ctrl>+cc  # execute line(s) in ipython pane