Pinned Repositories
cov2vec
cov2vec is a systematic effort to obtain SARS CoV-2 genome embeddings by encoding viral genomes with protein language models.
Covid19_data
Download, filter and process mutation data (from CNCB) and cases/deaths (from John Hopkins Resource).
DAE_imputation
dbgapr_dev
Test dbgapr, a dbGaP data organizer
Genome-wide-Imputation-Autoencoders
Accurate and Cost-effective Imputation of Genotypes at Whole Genome Level with Sparse Denoising Autoencoders
Genotype_Imputation_Pipeline
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
VSProjector
salvatoreloguercio's Repositories
salvatoreloguercio/cov2vec
cov2vec is a systematic effort to obtain SARS CoV-2 genome embeddings by encoding viral genomes with protein language models.
salvatoreloguercio/VSProjector
salvatoreloguercio/Covid19_data
Download, filter and process mutation data (from CNCB) and cases/deaths (from John Hopkins Resource).
salvatoreloguercio/DAE_imputation
salvatoreloguercio/dbgapr_dev
Test dbgapr, a dbGaP data organizer
salvatoreloguercio/Genome-wide-Imputation-Autoencoders
Accurate and Cost-effective Imputation of Genotypes at Whole Genome Level with Sparse Denoising Autoencoders
salvatoreloguercio/Genotype_Imputation_Pipeline
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
salvatoreloguercio/Imputation_Autoencoder
Deep learning algorithm for imputation of genetic variants
salvatoreloguercio/RepSeqPipe
A pipeline for processing Repertoire Sequencing (Rep-seq) data
salvatoreloguercio/salvatoreloguercio.github.io
salvatoreloguercio/sl
salvatoreloguercio/TOPMed_ref
Building a TOPMed gr38 reference panel.
salvatoreloguercio/ukbb_imaging
UKBB imaging data processing
salvatoreloguercio/VSProjector_CoV2
salvatoreloguercio/VSPsnap
Gaussian Process Regression on SARS-CoV2 data ( Genotype / Infectivity rate/ Fatality rate ).