salzberg-lab

Pinned Repositories

Balrog
Bacterial Annotation by Learned Representation of Genes
Language:Jupyter Notebook54 8 105
BalrogCPP
Bacterial Annotation by Learned Representation Of Genes (C++ version)
Language:C++6 7 20
bolotie
SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
Language:C++13 6 94
markraken
Can marker representation improve speed and accuracy for metagenomic classification of long reads?
Language:C++0 7 00
PSAURON
PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
Language:Python17 6 00
PSAURON-cpu
PSAURON with only CPU support
Language:Python00
Smaug
(Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene finding tools?
Language:Jupyter Notebook0 7 00

salzberg-lab's Repositories

salzberg-lab/Balrog
Bacterial Annotation by Learned Representation of Genes
Language:Jupyter Notebook54 8 105
salzberg-lab/PSAURON
PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
Language:Python17 6 00
salzberg-lab/bolotie
SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
Language:C++13 6 94
salzberg-lab/BalrogCPP
Bacterial Annotation by Learned Representation Of Genes (C++ version)
Language:C++6 7 20
salzberg-lab/markraken
Can marker representation improve speed and accuracy for metagenomic classification of long reads?
Language:C++0 7 00
salzberg-lab/PSAURON-cpu
PSAURON with only CPU support
Language:Python00
salzberg-lab/Smaug
(Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene finding tools?
Language:Jupyter Notebook0 7 00