Pinned Repositories
Equivalent-Junctions
MACHETE
nf-sicilian
ReadZS
The Read Z-score (ReadZS) is a metric that summarizes the transcriptional state of a gene in a single cell.
SICILIAN
SPLASH
SPLASH-plus
SPLASH_supervised_test
The repository contains the script for performing GLM with lasso-based multinomial regression
SpliZ
Nextflow implementation of SpliZ
SPRAWL
Subcellular RNA Ranked Statistics
salzmanlab's Repositories
salzman-lab/SPLASH
salzman-lab/SICILIAN
salzman-lab/SpliZ
Nextflow implementation of SpliZ
salzman-lab/Equivalent-Junctions
salzman-lab/nf-sicilian
salzman-lab/ReadZS
The Read Z-score (ReadZS) is a metric that summarizes the transcriptional state of a gene in a single cell.
salzman-lab/SPLASH-plus
salzman-lab/SPRAWL
Subcellular RNA Ranked Statistics
salzman-lab/MACHETE
salzman-lab/SPLASH_supervised_test
The repository contains the script for performing GLM with lasso-based multinomial regression
salzman-lab/.github
special repo that hosts README for this Gitub Organziation
salzman-lab/bioinformatics-utils
Repository to share useful scripts for bioinformatics and SPLASH post-processing
salzman-lab/blast_multiprocessing
salzman-lab/compactor
Implementation of compactors used in Tabula Sapiens Smart-Seq 2 analysis.
salzman-lab/compactor_pfam_rfam
A python script, 2 under-the-hood bash scripts, and a Sherlock sbatch to run Rfam and Pfam on Adam Gudys's compactor tabular output, then to merge the best Rfam and Pfam hit for each compactor.
salzman-lab/KNIFE
Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms
salzman-lab/sample_target_heatmaps
A Python script to perform SATC unpacking and to plot heatmaps for an input anchor set.
salzman-lab/sequence_features
A repository to store scripts describing features such as repeats and editing in nucleotide sequences.