Pinned Repositories
backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
bioseq-mode
An Emacs major mode for viewing and editing DNA and peptide sequences
biotk
collection of simple ad-hoc bioinformatics tool kit
cafe-du-mRcredi
Introduction du LEM Zeppelin au tidyverse, printemps 2017 !
circosJS
d3 library to build circular graphs
emacs-config
My personal emacs configuration based on use-package.
emacs-hjkl
Move in emacs with context-dependent keybindings that are language agnostic.
emacs-iexpand
Expand commands at point
prokgc
Computes gc contents in prokaryotic genomes
sam217pa's Repositories
sam217pa/emacs-iexpand
Expand commands at point
sam217pa/backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
sam217pa/biotk
collection of simple ad-hoc bioinformatics tool kit
sam217pa/clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
sam217pa/demo-gei
sam217pa/demo-website
sam217pa/edlib-rs
rust binding to edlib
sam217pa/emacs-shelter
(provide 'shelter)
sam217pa/emacs.g
The Emacs Collective
sam217pa/ESS
Emacs Speaks Statistics: ESS
sam217pa/genometools
GenomeTools genome analysis system.
sam217pa/ggbio
Grid and ggplot2 based visualization for biological data
sam217pa/horizon-wiki
sam217pa/kmtricks
modular k-mer count matrix and Bloom filter construction for large read collections
sam217pa/metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
sam217pa/MitoFinder
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
sam217pa/nano-emacs
GNU Emacs / N Λ N O - Emacs made simple
sam217pa/nano-theme
GNU Emacs / N Λ N O Theme
sam217pa/OpenLogic
An open-source, customizable intermediate logic textbook
sam217pa/org-gtd.el
A package for using GTD using org-mode (beta)
sam217pa/pandoc-templates
Templates for pandoc, tagged to release
sam217pa/pbmpi
phylobayes mpi
sam217pa/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
sam217pa/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
sam217pa/sfreemap
A Simulation Free approach for Stochastic Mapping
sam217pa/simbook
Simulation Methods in Population Genetics
sam217pa/snakemake-workflows
sam217pa/supp-mat
sam217pa/TrEMOLO
Transposable Elements MOvement detection using LOng reads
sam217pa/website