Pinned Repositories
Benifly
Offline version of Kinefly that can run on Windows/Linux without ROS
camera_strober
Arduino firmware and Python library for controlling camera during muscle imaging (from Will Dickson)
dorsal_vnc_analysis
MATLAB code used for analysis associated with Ehrhardt et al., 2023
EAT
Python toolbox for analyzing data from Expresso behavioral assays (feeding + tracking measurments)
exp_scripts
Part of a project to study the neuromechanics of the insect wing hinge. This repository contains the scripts and protocols used to drive automated experiments using the robot operating system. From Thad Lindsay (@psilentp).
flir_camera_drivers
ROS drivers for FlirImaging cameras (from @ros-drivers)
flylib
A lightweight data warehouse api for behavioral and neuroscience experiments performed using the robot operating system.
Kinefly
ROS program to extract kinematic variables from the image stream of a tethered winged insect.
ledpanels
This ROS node receives message commands on the topic 'ledpanels/command', and communicates with Reiser panels hardware.
mosquito
Python tools for analysis and collection of mosquito data
samcwhitehead's Repositories
samcwhitehead/mosquito
Python tools for analysis and collection of mosquito data
samcwhitehead/Benifly
Offline version of Kinefly that can run on Windows/Linux without ROS
samcwhitehead/exp_scripts
Part of a project to study the neuromechanics of the insect wing hinge. This repository contains the scripts and protocols used to drive automated experiments using the robot operating system. From Thad Lindsay (@psilentp).
samcwhitehead/muscle_model
Tools for registering fluorescence data from flight muscles to confocal data
samcwhitehead/planotaxis
Program for aligning a 2d projection of a 3d anatomical model onto an image plane. This alignment can then be used to perform signal extraction using an optical blur model. From Thad Lindsay (@psilentp)
samcwhitehead/wing-hinge-mujoco
Mujoco models of the wing hinge using Igor's segmentation data
samcwhitehead/nsb-2023-muscle-imaging
code tools for analysis of GCaMP imaging of fly steering muscles for the Neural Systems and Behavior course at MBL, Woods Hole
samcwhitehead/nsb-2023-magnotether
code tools for analysis of behavioral data collected from flies in the magnotether arena undergoing
samcwhitehead/dorsal_vnc_analysis
MATLAB code used for analysis associated with Ehrhardt et al., 2023
samcwhitehead/muscle_transcriptomics
some code tools for looking at fly wing muscle transcriptomic data
samcwhitehead/muscle_imaging_util
Some utility scripts that can be used for both muscle and tendon imaging
samcwhitehead/muscle_imager
Run muscle imaging cameras on ROS
samcwhitehead/flir_camera_drivers
ROS drivers for FlirImaging cameras (from @ros-drivers)
samcwhitehead/Kinefly
ROS program to extract kinematic variables from the image stream of a tethered winged insect.
samcwhitehead/camera_strober
Arduino firmware and Python library for controlling camera during muscle imaging (from Will Dickson)
samcwhitehead/EAT
Python toolbox for analyzing data from Expresso behavioral assays (feeding + tracking measurments)
samcwhitehead/PiezoPaperExpressoCode
Code used for the analysis of Drosophila feeding data collected using the Expresso system in Min, et al., 2021
samcwhitehead/ledpanels
This ROS node receives message commands on the topic 'ledpanels/command', and communicates with Reiser panels hardware.
samcwhitehead/flylib
A lightweight data warehouse api for behavioral and neuroscience experiments performed using the robot operating system.
samcwhitehead/phidgets_daq
ROS powered phidgets data acquisition code for obtaining, publishing, and real time viewing, of 500-1000 Hz data streams
samcwhitehead/phidgets
ROS support for Phidgets.