samgould2

Biology PhD Student at MIT Koch Institute // Sánchez-Rivera Lab

MITCambridge, MA

Pinned Repositories

p53-prime-editing-sensor
Code for analysis of p53 prime editing sensor screening data
Language:Jupyter Notebook21
PEGG2.0
updates to PEGG package
Language:Jupyter Notebook10
prime-vs-base-editing
An analysis of the capabilities of prime editing vs. base editing to model mutations present in the MSK IMPACT cancer database. Includes mouse orthology analysis as well.
Language:Jupyter Notebook11
base-editing-sensor-analysis
Modifiable pipeline for base editing sensor analysis
Language:Jupyter Notebook00
KEAP1-mutLOH-prime-editing-sensor
Prime editing sensor library generation & analysis
Language:Jupyter Notebook00
siglec-11-tiling-library
Base editing tiling library (NG) for Siglec-1 with predicted edits.
Language:Jupyter Notebook00
PEGG
Prime Editing Guide Generator
Language:Python30
Nucleoid-Dynamics
A polymer physics model of the E. coli nucleoid. Used to analyze nucleoid dynamics.
Language:Jupyter Notebook10
STAR
RNA-seq aligner
Language:Jupyter Notebook00

samgould2/base-editing-sensor-analysis
Modifiable pipeline for base editing sensor analysis
Language:Jupyter Notebook
samgould2/siglec-11-tiling-library
Base editing tiling library (NG) for Siglec-1 with predicted edits.
Language:Jupyter Notebook
samgould2/PEGG
Prime Editing Guide Generator
Language:Python3
samgould2/KEAP1-mutLOH-prime-editing-sensor
Prime editing sensor library generation & analysis
Language:Jupyter Notebook
samgould2/STAR
RNA-seq aligner
Language:Jupyter Notebook
samgould2/PEGG2.0
updates to PEGG package
Language:Jupyter Notebook1
samgould2/p53-prime-editing-sensor
Code for analysis of p53 prime editing sensor screening data
Language:Jupyter Notebook21
samgould2/prime-vs-base-editing
An analysis of the capabilities of prime editing vs. base editing to model mutations present in the MSK IMPACT cancer database. Includes mouse orthology analysis as well.
Language:Jupyter Notebook11
samgould2/Nucleoid-Dynamics
A polymer physics model of the E. coli nucleoid. Used to analyze nucleoid dynamics.
Language:Jupyter Notebook1