sampearl
Bioinformatics Scientist, Data Analyst, Computer Scientist
Myriad Women's HealthSouth San Francisco, CA
Pinned Repositories
flake8-functions
flake8 plugin for validation of function parameters (length, complexity, etc)
biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
PyGithub
Typed interactions with the GitHub API v3
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
flake8-functions
flake8 plugin for validation of function parameters (length, complexity, etc)
PyGithub
Typed interactions with the GitHub API v3
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
stor
A cross-compatible CLI and Python API for accessing block and object storage
sampearl's Repositories
sampearl/biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
sampearl/flake8-functions
flake8 plugin for validation of function parameters (length, complexity, etc)
sampearl/PyGithub
Typed interactions with the GitHub API v3
sampearl/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
sampearl/stor
A cross-compatible CLI and Python API for accessing block and object storage