physio

Simple python toolbox to analyse physio signals (Respiration, ECG, and RSA)

Please jump to documentation now https://physio.readthedocs.io

Manuscript

respiration cycle detection
respiration cycle features (amplitude, duration, volumes ...)
simple preprocess on signal : filter using scipy and smoothing
ecg peak detection
ecg/hrv metrics (time domain and freq domain)
rsa : new approach to get cycle-per-cycle metrics
cyclic deformation machinery : a simple strecher of any signal to cycle template
simple reader of micromed and brainvision using neo
"automagic" parameters for differents species

## Installation from PyPi

pip install physio

## Installation from source

git clone https://github.com/samuelgarcia/physio.git
cd physio
pip install -e .

Update:

cd physio
git pull origin main

Samuel Garcia with the help of Valentin Ghibaudo and Jules Granget

This toolbox is used in the CMO team from the CRNL.