celegans-sensory-code

Written by Albert Lin & Vivek Venkatachalam

From Lin et al., 2022: "Functional imaging and quantification of multi-neuronal olfactory responses in C. elegans"

Code for annotating, tracking, and extracting calcium activity from C. elegans chemosensory neurons, built on software developed for Venkatchalam et al., 2016, along with some analysis code. Refer to the "Readme.docx" file for further details.

Requires MATLAB 2018 or later, and also requires "bioformats_package.jar", available here: https://www.openmicroscopy.org/bio-formats/downloads/