Y24-372 - [BUG] incorrect country_of_origin options

[neilsycamore]

When setting a sample's country_of_origin (in a manifest or via the sample edit view) the options "not applicable: control sample" and "not applicable: sample group" are not correct and prevents a sample from being accessioned

The correct options are:
"missing: control sample" and "missing: sample group"
this is listed in the ERC000011 checklist

These will need changing.

There will be a data migration story required

Update @sw32 when closing this

[neilsycamore]

For context and any testing required:
The bug at the moment only affects ENA accessioning service as countryOf_origin is not required by the EGA
Snippet from the submission object

"country_of_origin"=>
        #<Accession::TagCountryOfOrigin:0x00007f9c51524708
         @class_name="::Accession::TagCountryOfOrigin",
         @ebi_name=:"geographic_location_(country_and/or_sea)",
         @errors=nil,
         @groups=[:sample_attributes],
         @name="country_of_origin",
         @services=[:ENA],
         @value="not applicable: control sample">

[neilsycamore]

How to test in UAT:
I created a manifest in UAT (study id: 1929, "Test ENA accessioning")
sm = SampleManifest.find_by(id:19348)
sample = sm.samples.select {|s| s.ebi_accession_number.nil?}.first
accessionable = Accession::Sample.new(Accession.configuration.tags, sample)
submission = Accession::Submission.new(User.find_by(api_key: configatron.accession_local_key), accessionable)
response = submission.post
response.errors
=>
["Error validating sample a33bc2ae-8f9d-11ef-b845-0242c01b9736 with checklist id ERC000011.",
"Error at . Invalid choice. The value "not applicable: control sample" for field "GEOGRAPHIC_LOCATION_(COUNTRY_AND/OR_SEA)" must contain one of the following values

sample.sample_metadata.update!(country_of_origin: 'missing: control sample')
accessionable = Accession::Sample.new(Accession.configuration.tags, sample)
submission = Accession::Submission.new(User.find_by(api_key: configatron.accession_local_key), accessionable)
resp = submission.post
resp.errors
=> []