Issues
- 1
Y24-192 - Seq 79: Remove all unused sequencing platforms from SS submission templates
#4198 opened by sg32-gif - 2
Y24-268 - Create a presenter for automated submission for WGS branch on Adp Lig plate
#4290 opened by yoldas - 1
Y24-267 - LCM Triomics Pipeline configuration and integration test for WGS branch
#4289 opened by yoldas - 3
Y24-245 - As lab users we would like to be able to make a submission from a Stock Plate for the 10x - CITEseq and Emseq pipelines so that we no longer need to do a fake cherrypick to reduce workload and remove creation of fake data
#4270 opened by stevieing - 1
Y24-187 - As TL I would like to update the support links in SequenceScape to point to FreshService so that we can transition from RT [DUE 14/10/24]
#4194 opened by TWJW-SANGER - 0
Y24-133 - Update Rails 6.1 autoloader to Zeitwerk
#4141 opened by dasunpubudumal - 13
- 7
Y24-247 - As a GSU PM (YL) I would like to verify the manually compiled QC data of plates from a supplier is consistent with the data already processed in Sangers systems so that we can select samples with good data for sequencing.
#4272 opened by TWJW-SANGER - 0
- 1
Y24-111 Set default fields to null when requesting additional sequencing
#4126 opened by neilsycamore - 0
Y24-242 - As a Bioinformatics Support Officer I would like to close any issues that are no longer relevant to tidy up make the repo easier to maintain and have a better handle on the number of outstanding issues
#4267 opened by stevieing - 4
Y24-266 - LCM Triomics Pipeline configuration and integration test for EMSeq branch
#4288 opened by yoldas - 2
Y24-271 - Configuration and integration test for the start of LCM Triomics Pipeline
#4291 opened by yoldas - 8
Y24-209 - Update the Short Read Team Cross Charging Report with corresponding to NovaSeqX platforms
#4226 opened by SujitDey2022 - 0
Y24-213 - Remove use of `default_includes` in API v2 resources and the underlying support for it
#4233 opened by sdjmchattie - 6
- 0
- 6
Y24-114 As SSRs we would like to not have to perform fake cherry picks on stock plates to make submissions so that we are not recording fake data.
#4127 opened by TWJW-SANGER - 2
Y24-219 - Link tag groups with tag sets
#4237 opened by yoldas - 3
Y24-218 - Create a new tag set model to link tag groups
#4236 opened by yoldas - 7
Y24-221 - Create Sequencescape pages for tag sets
#4239 opened by yoldas - 5
Y24-201 - As GSU Operational Lead (Anna G) I would like to be able to import up to 70 plates of samples into SequenceScape so that we can avoid manual errors and increase efficiency.
#4206 opened by TWJW-SANGER - 3
Y24-081 Add Program name field to MLWH
#4109 opened by neilsycamore - 0
Y24-170 - Link dual index tag groups
#4160 opened by KatyTaylor - 0
Y24-236 - [BUG] Uploading the same manifest concurrently can cause duplicate samples/aliquots to be created.
#4266 opened by BenTopping - 5
- 5
Y24-181 - Clean up HiSeq submission templates
#4189 opened by KatyTaylor - 0
- 2
Y24-172 - As PSD we want to make the developer experience of enabling/disabling pipeline in WIP identical between SequenceScape and Limber so that we reduce confusion and mistakes.
#4178 opened by TWJW-SANGER - 2
Y24-220 - Create API V2 end point for tag sets
#4238 opened by yoldas - 1
Y24-229 - Create Sequencescape Generate Tag Set UAT Action
#4248 opened by yoldas - 0
Y24-077 Comments not fully displayed
#4107 opened by neilsycamore - 1
Y24-226 - Test Sequencescape and Limber setup
#4246 opened by KatyTaylor - 3
Y24-086 As NPG we would like an extra "Contaminated Human Data Access Group" field on the New Study Page so that access to the "likely human" read data that NPG already creates separately.
#4115 opened by TWJW-SANGER - 0
- 0
- 0
Y24-169 - Allow faculty input PBMC tubes down pipeline
#4159 opened by KatyTaylor - 0
Y24-139 - ANOSPP - Add a manifest template for WGS with a restriction on use of H12
#4146 opened by andrewsparkes - 5
Y24-121 - As a developer (Ben) I would like there to be fine-grained batch creation validation for sequencing pipelines
#4135 opened by BenTopping - 5
Y24-131 - Fix setting up the integration suite to work with Sequencescape running with Rails 6.1 defaults
#4139 opened by dasunpubudumal - 0
- 3
- 2
- 2
Y24-174 - As a developer (Ben) I would like to investigate the batch npg_set_state behaviour
#4180 opened by BenTopping - 2
Y24-130 - Fix asset controller test for NPG actions with Rails 6.1 defaults
#4138 opened by dasunpubudumal - 1
- 1
Y24-164 - Update help/feedback link
#4151 opened by neilsycamore - 2
- 0
- 0