Pinned Repositories
academic-phrases
Bypass that mental block when writing your papers.
bobby
Biblio extractor for PubMed
Community_Software_Tools_for_NGS
cytodata-hackathon-2018
Ideas, code and results of the 2018 CytoData hackathon
learn-regex
Learn regex the easy way
PubMap
Shiny app to analyze PubMed affiliations, highlighting journals and institutes related to a research topic
Pubmed-Batch-Download
Batch download articles based on PMID (Pubmed ID)
PubmedSearch
Automated Pubmed search / plotting number of articles per year
Semantic-search-log-analysis-pipeline
Classify web visitor queries so you can chart, and respond to, trends in information seeking
TumorSTOppy
Machine learning to distinguish two types of T-cell receptor subregions.
sannpeterson's Repositories
sannpeterson/Semantic-search-log-analysis-pipeline
Classify web visitor queries so you can chart, and respond to, trends in information seeking
sannpeterson/TriFECTA
The goal of this project is use natural language processing to extract exclusion and inclusion criteria from free form text fields to match patients with clinical trials.
sannpeterson/Using-PubMed-MEDLINE-Metadata-to-Generate-Knowledge
sannpeterson/AnnotationQuery-pubmed
Experiment using Elsevier Labs' Annotation Query library to query annotations of PubMed articles. The code is in Scala and leverage SPARK processing. The annotations for the articles are extracted from PubTator and Stanford Core NLP.
sannpeterson/BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
sannpeterson/cairoshell
Cairo is a customizable, intuitive desktop environment for Windows.
sannpeterson/cosmos
Algorithms that run our universe | Your personal library of every algorithm and data structure code that you will ever encounter | Ask us anything at our forum
sannpeterson/CTEligible
Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials
sannpeterson/electron-dockable
dockable panel for electron (work in progress...)
sannpeterson/FastContext
FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).
sannpeterson/hello-world
sannpeterson/library
:blue_book: A curated library of commands for the Backtick Chrome Extension.
sannpeterson/literature-search
Crawl and annotate pubmed articles with variants
sannpeterson/Mailspring-Theme-Starter
A starting point for creating your own custom Mailspring themes!
sannpeterson/pinemup
pin 'em up is a tool for placing small notes/post-its (e.g. TODOs/Reminders) on your desktop and organize them in various ways (categorize,hide,upload,export,...). Due to platform independence, the notes can also be shared on different operating systems.
sannpeterson/PrecisionMedicineToolkit
Search public databases for given genotypic information
sannpeterson/Publication-Figures-Web-Scraping
This tool provides a method for scrapping through NCBI's PubMed publications and retrieving the figures from open access and publicly available publications.
sannpeterson/PublicationHarvester
PublicationHarvester: An open-source software tool for science policy research that gathers and analyzes PubMed bibliographic data
sannpeterson/pubmed-similarity
sannpeterson/pubmed_text_classification
sannpeterson/PubMedApp
sannpeterson/PubMedMiner.jl
Tools and examples to study co-occurrences in PubMed articles using Julia
sannpeterson/pubrunner
A framework for keeping biomedical text mining result up-to-date
sannpeterson/pymed
PyMed is a Python library that provides access to PubMed.
sannpeterson/simpread
简悦 ( SimpRead ) - 让你瞬间进入沉浸式阅读的扩展
sannpeterson/Slicer
Multi-platform, free open source software for visualization and image computing.
sannpeterson/slicermrb2
sannpeterson/spicetify-cli
Commandline tool to customize Spotify client. Supports Windows, MacOS and Linux.
sannpeterson/Taskplay
Taskplay is a small utility which adds media playback controls to the Windows System Tray
sannpeterson/zotsite
Export Zotero to a stand-alone web site