sansomlab/tenx

PHATE map run on scaled data (not integrated)

Closed this issue · 2 comments

kathrinjansen commented

In the case of integrated data, the PHATE algorithm is run on the scaled data slot from the Seurat object instead of an integrated reduced dimension. This could be made an option in the pipeline.yml or somewhere explicitly explained.

snsansom commented

Should be addressed by 9148d5e - please test.

kathrinjansen commented

This works now. Thanks for fixing.