sansomlab/tenx

Issues

• avg_logFC changed to avg_log2FC

  #126 opened 3 years ago by Erinke89
  2

• cellrangerAggr fails due to 'library_id'

  #129 opened 3 years ago by Erinke89
  0

• qc_scatterplots.R error

  #123 opened 4 years ago by Erinke89
  0

• PHATE map run on scaled data (not integrated)

  #101 opened 4 years ago by kathrinjansen
  2

• Barcode in diffusion map output not correct

  #99 opened 4 years ago by kathrinjansen
  1

• seurat 3.1.5 Jackstraw disabled on SCT assay

  #100 opened 4 years ago by bio-la
  3

• Just a few quick questions.

  #91 opened 5 years ago by CiaranKennedy
  1

• Need a quick clarification regarding decision to use RNA assay for DE after SCTransform

  #55 opened 5 years ago by CodeInTheSkies
  3

• Add cellbrowser functionality

  #60 opened 5 years ago by kathrinjansen
  2

• Overplotting of violins in general QC plots

  #75 opened 5 years ago by kathrinjansen
  1

• Add Force-directed graphs

  #61 opened 5 years ago by kathrinjansen
  1

• tSNE colors

  #64 opened 5 years ago by kathrinjansen
  0

• Leiden clustering algorithm

  #63 opened 5 years ago by kathrinjansen
  0

• Reduced dimension hard-coded

  #65 opened 5 years ago by kathrinjansen
  1

• Fix deprecated cex.use argument in Seurat::FeatureScatter in seurat_begin.R

  #48 opened 5 years ago by kevinrue
  1

• Error in summariseGenesets.R

  #47 opened 5 years ago by kevinrue
  2

• Error in filterGenesets: No genesets passed filters (summariseGenesets.R)

  #37 opened 5 years ago by agammage
  1

• fix factor y-axis for summary of number of degenes per cluster (deNumbers.*.png)

  #11 opened 6 years ago by bio-la
  2