Pinned Repositories
ALLHiC
A package to scaffolding polyploidy or heterozygosis genome using Hi-C data
assembly-stats
Get assembly statistics from FASTA and FASTQ files
blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
BTSearcher
BTSearcher for mac.
Chloroplast-genome-single-copy-orientation-ratio-detection
Estimate the ratio of different directions of single copy in the chloroplast genome
Chroloplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
Comparative-Annotation-Toolkit
editTools
:mag_right: Detection and analysis of RNA editing evidence from VCF data
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
OM-HiC-scaffolding
Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
sanvva's Repositories
sanvva/ALLHiC
A package to scaffolding polyploidy or heterozygosis genome using Hi-C data
sanvva/OM-HiC-scaffolding
Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
sanvva/assembly-stats
Get assembly statistics from FASTA and FASTQ files
sanvva/blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
sanvva/BTSearcher
BTSearcher for mac.
sanvva/Chloroplast-genome-single-copy-orientation-ratio-detection
Estimate the ratio of different directions of single copy in the chloroplast genome
sanvva/Chroloplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
sanvva/Comparative-Annotation-Toolkit
sanvva/editTools
:mag_right: Detection and analysis of RNA editing evidence from VCF data
sanvva/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
sanvva/Fastq_clean
Fastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer
sanvva/Flye
Fast and accurate de novo assembler for single molecule sequencing reads
sanvva/gawn
GAWN - Genome Annotation Without Nightmares
sanvva/Genome-data-of-Hanfu-apple
FASTA files of chromosomes and genes, gff files for gene models.
sanvva/GenomeAlign
sanvva/hello-world
just begin
sanvva/LTR_retriever
A highly accurate and sensitive program to identify LTR retrotransposons
sanvva/medusa
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
sanvva/pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a BAM file
sanvva/PGA
Plastid Genome Annotation
sanvva/pipeline-for-isoseq
sanvva/quickmerge
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
sanvva/shovill
Faster SPAdes assembly of Illumina reads
sanvva/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
sanvva/Unicycler
hybrid assembly pipeline for bacterial genomes
sanvva/wgd
Python package and CLI for whole genome duplication analyses
sanvva/wtdbg-1.2.8
Important update of wtdbg