sappelhoff/pyprep

Issues

• Move from `pick_types` to `inst.pick`

  #151 opened 2 months ago by sappelhoff
  5

• add channels in raw.info['bads'] to unusable channels in Reference class

  #146 opened 4 months ago by john-veillette
  5

• Make `ransac.find_bad_by_ransac` private

  #159 opened 4 months ago by sappelhoff
  1

• Make the entire `Reference` class private

  #158 opened 4 months ago by sappelhoff
  1

• PREP can't always flag low amplitude channels as bad-by-deviation

  #83 opened 4 years ago by a-hurst
  5

• Turn matprep submodule into a workflow run from this repository

  #160 opened 4 months ago by sappelhoff
  0

• [Feature suggestion] Allow for relevant annotation selection during processing.

  #133 opened a year ago by gael-vanderlee
  1

• We should replace our own implementation of MAD by the one now available in scipy

  #149 opened 5 months ago by sappelhoff
  0

• Move towards `np.random.default_rng`

  #150 opened 5 months ago by sappelhoff
  0

• CI: Fixes needed for Numpy 2.0

  #147 opened 5 months ago by sappelhoff
  0

• Add to NoisyChannel a bad_by_psd method to tackle low-frequency artefacts

  #143 opened a year ago by nabilalibou
  8

• Possible to add an argument in find_bad_by_nan_flat() to change FLAT_THRESHOLD ?

  #142 opened a year ago by nabilalibou
  2

• New release?

  #136 opened a year ago by hoechenberger
  4

• How to include the prep output in my preprocessing pipeline?

  #135 opened a year ago by m4sp3
  1

• Documentation for Noisy Channels Algorithms' stand-alone use

  #131 opened 2 years ago by yjmantilla
  1

• find_all_bads throws inf/nan error after filtering/detrending?

  #129 opened 2 years ago by sunshineinsandiego
  12

• Issue with RawBrainVision

  #127 opened 2 years ago by Sam54000
  2

• pyprep.utils._filter_design throws error for large sampling rates

  #109 opened 3 years ago by john-veillette
  4

• Computation of window size based on cutoff frequency in local detrend method

  #125 opened 2 years ago by danibene
  1

• Question: using pyprep.NoisyChannels on numpy arrays

  #126 opened 2 years ago by sunshineinsandiego
  1

• Passing a custom montage to the PrepPipeline(raw, montage=?)?

  #111 opened 2 years ago by neerajww
  5

• update issue/pr templates

  #124 opened 2 years ago by sappelhoff
  1

• migrate from `.zenodo.json` to `CITATION.cff`

  #123 opened 2 years ago by sappelhoff
  1

• List of channel names causes TypeError in find_bad_by_ransac

  #116 opened 2 years ago by OleBialas
  2

• Make pyprep load MNE raw data for object, if not already loaded

  #106 opened 3 years ago by SebastianSpeer
  3

• Saving prep.raw give error " ValueError: Measurement infos are inconsistent for dig"

  #113 opened 3 years ago by walkerped
  4

• Use the MNE logger to set the verbosity

  #105 opened 3 years ago by mscheltienne
  6

• filt vs filtfilt (MATLAB implementation)

  #107 opened 3 years ago by sappelhoff
  0

• Add a "reject_by_annotation" parameter for finding bad channels

  #108 opened 3 years ago by sappelhoff
  1

• Release 0.4

  #101 opened 3 years ago by sappelhoff
  4

• Adding flake8 to pre-commit-config

  #103 opened 3 years ago by joDancker
  0

• Strange PyPrep/Ransac outputs

  #100 opened 3 years ago by golnousha
  1

• Weird handling of initial bad-by-SNR channels during robust referencing

  #94 opened 4 years ago by a-hurst
  1

• Extend PrepPipeline to allow performing PREP in stages

  #73 opened 4 years ago by a-hurst
  11

• Adaptive line noise removal differs between PyPREP and Matlab PREP

  #82 opened 4 years ago by a-hurst
  6

• Improved API for PREP configuration

  #95 opened 4 years ago by a-hurst
  6

• Real-world benchmarking for (Py)PREP

  #98 opened 4 years ago by a-hurst
  0

• Interpolation of bad channels differs numerically between PyPREP and MatPREP

  #77 opened 4 years ago by a-hurst
  10

• Bad-by-dropout channels sometimes ignored during Reference

  #97 opened 4 years ago by a-hurst
  0

• PyPREP interpolates more channels than MATLAB PREP during re-referencing

  #91 opened 4 years ago by a-hurst
  3

• PyPREP excludes interpolated NaN/flat/low-SNR channels from average referencing

  #90 opened 4 years ago by a-hurst
  0

• RANSAC random seeds work differently in PyPREP than in MATLAB PREP

  #74 opened 4 years ago by a-hurst
  8

• fill up .zenodo.json before Release

  #87 opened 4 years ago by sappelhoff
  11

• Dropout channel detection broken in PyPREP

  #80 opened 4 years ago by a-hurst
  3

• First-pass average referencing differs between PyPREP and Matlab PREP

  #75 opened 4 years ago by a-hurst
  2

• PyPREP starts re-referencing with more 'bad' channels than Matlab PREP

  #76 opened 4 years ago by a-hurst
  2

• RANSAC correlations (and logic) differ between PyPREP and MATLAB PREP

  #65 opened 4 years ago by a-hurst
  16

• PyPREP excludes more channels from RANSAC than MATLAB PREP

  #63 opened 4 years ago by a-hurst
  4

• RANSAC channel picks differ between MATLAB PREP and PyPREP using the same seed

  #61 opened 4 years ago by a-hurst
  7

• "Bad by flat" threshold differs between PyPREP and Matlab PREP

  #59 opened 4 years ago by a-hurst
  1