Pinned Repositories
catalytic_model_US
covid19-agestructureSEIR-wuhan-social-distancing
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China
dengue-antigenic-dynamics
Investigating dengue virus antigenic evolution. Supplements work from:
dengue-catalytic-model
code to run dengue catalytic model from age-specific case notification data
dengue-thailand-2014-forecasts
Code and public data for "Challenges in real-time prediction of infectious disease: a case study of dengue in Thailand"
dengue-Zika-chik_Americas
Dengue_expansion
Data and code to accompany "The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil."
dengue_foi
Example code to estimate force of infection from age-stratified incidence data, as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue".
dengue_t2m_severity_paper
Repository for codes and analysis on the impact of temperature associated with the Relative Risk for Dengue Hospitalization
EpiDynamics
An R package with Dynamic Models of infectious diseases
sarahkada's Repositories
sarahkada/catalytic_model_US
sarahkada/covid19-agestructureSEIR-wuhan-social-distancing
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China
sarahkada/dengue-antigenic-dynamics
Investigating dengue virus antigenic evolution. Supplements work from:
sarahkada/dengue-catalytic-model
code to run dengue catalytic model from age-specific case notification data
sarahkada/dengue-thailand-2014-forecasts
Code and public data for "Challenges in real-time prediction of infectious disease: a case study of dengue in Thailand"
sarahkada/dengue-Zika-chik_Americas
sarahkada/Dengue_expansion
Data and code to accompany "The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil."
sarahkada/dengue_foi
Example code to estimate force of infection from age-stratified incidence data, as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue".
sarahkada/dengue_t2m_severity_paper
Repository for codes and analysis on the impact of temperature associated with the Relative Risk for Dengue Hospitalization
sarahkada/EpiDynamics
An R package with Dynamic Models of infectious diseases
sarahkada/EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
sarahkada/EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
sarahkada/hello-world
sarahkada/mrp_contact_patterns_code_release
sarahkada/newgit
sarahkada/Resources_and_Bookmarks
Personal bookmarks and cheat sheets
sarahkada/sarahkada
personal webpage
sarahkada/styles
Official repository for Citation Style Language (CSL) citation styles.
sarahkada/SuperinfectionCoevolution
Simulation code for the manuscript "Superinfection and the coevolution of parasite virulence and host recovery rate
sarahkada/Useful-functions
Functions I find useful (some stolen from bobFunctions by @bobverity)
sarahkada/wcov
Pattern of early human-to-human transmission of Wuhan 2019-nCoV
sarahkada/ZikaModel
Discrete time model of Zika transmission using odin