sarastokes
Assistant Professor in Ophthalmology & Neuroscience studying retinal circuits with adaptive optics and connectomics
University of Rochester
Pinned Repositories
ao-seg
Neural nets for segmenting fluorescent neurons frimaged with adaptive optics
AOData
Framework for adaptive optics data analysis
appbox
A MATLAB toolbox for building Apps
foveal-spectral-tuning
Code related to a paper on foveal spectral tuning
h5tools-matlab
A toolbox of high-level functions for working with HDF5 files in MATLAB
OCT-tools
Segmentation and analysis of choroid and retinal layers from OCT b-scans
py-sbfsem
A Python package for Viking connectomics
sara-aodata-package
Personal package for AOData
SBFSEM-tools
Matlab toolbox for connectomics analysis and rendering
sim-sim
Simulations of structured illumination microscopy - resolution of RGC dendrites
sarastokes's Repositories
sarastokes/OCT-tools
Segmentation and analysis of choroid and retinal layers from OCT b-scans
sarastokes/SBFSEM-tools
Matlab toolbox for connectomics analysis and rendering
sarastokes/AOData
Framework for adaptive optics data analysis
sarastokes/foveal-spectral-tuning
Code related to a paper on foveal spectral tuning
sarastokes/sim-sim
Simulations of structured illumination microscopy - resolution of RGC dendrites
sarastokes/ao-seg
Neural nets for segmenting fluorescent neurons frimaged with adaptive optics
sarastokes/appbox
A MATLAB toolbox for building Apps
sarastokes/covid19-data-import
Code for parsing COVID-19 datasets along with generic instruction on data importing in MATLAB
sarastokes/described-data
Classes for adding metadata to MATLAB numeric data types
sarastokes/h5tools-matlab
A toolbox of high-level functions for working with HDF5 files in MATLAB
sarastokes/RoiViewer
Standalone region of interest response viewer
sarastokes/sara-aodata-package
Personal package for AOData
sarastokes/DualAO-package
Protocols for flood and SLO arms
sarastokes/facile-tools
Tools for segmentation and analysis of GCaMP6-expressing RGCs imaged in vivo with adaptive optics
sarastokes/faoslo-online
Online analysis for calcium imaging with fluorescence adaptive optics scanning laser ophthalmoscopes
sarastokes/igor-tools
useful routines for publication-quality figures in igor pro
sarastokes/imagej-tools
Useful routines for ImageJ
sarastokes/keymaps
Keymaps for my mechanical keyboards
sarastokes/NonCardinalRGCs
Code related to non-cardinal RGC paper
sarastokes/patterson-package
Retinal physiology experiment protocols 2.0
sarastokes/patterson-package-v2
Electrophysiology protocols
sarastokes/preprocessing-tools
Workflow for preprocessing functional imaging data
sarastokes/Psychophysics
sarastokes/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
sarastokes/RabbitGammaCell
Code and data used in Bordt et al (2019) Synaptic inputs and connectivity of a sparsely branched ganglion cell in rabbit retina
sarastokes/sarastokes.github.io
sarastokes/SConeEdgeDetection
Data and code for Patterson et al (2019) Scientific Reports
sarastokes/SmoothMonostratifiedRGC
Code for replicating the figures in Patterson, Girresch et al (2023)
sarastokes/symphony-matlab
Symphony Data Acquisition System
sarastokes/SynapticInputsToOnParasolCells
Code for Bordt, Patterson et al (in press) J Comp Neurol