saroudant

sincei

A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data

Percolate

Implementation of Percolate, an exponential family JIVE statistical model for multi-view integration

PRECISE

sobolev_alignment

Sobolev alignment of deep probabilistic models for comparing single cell profiles

sobolev_alignment_manuscript

TRANSACT

Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.

Balistic-project

I have designed this software for a project in my last year of Bachelor at Mines ParisTech. It is called the "Balistic Game" : two war-engines are confronting to one another and the first able to destroy the other wins. It has been designed in Java

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

paradoxical_activation_scrnaseq

Analysis pipeline for the scRNA-seq data presented in "Paradoxical activation of oncogenic signaling as a cancer treatment strategy"

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

saroudant/paradoxical_activation_scrnaseq

Analysis pipeline for the scRNA-seq data presented in "Paradoxical activation of oncogenic signaling as a cancer treatment strategy"

saroudant/tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

saroudant/Balistic-project

I have designed this software for a project in my last year of Bachelor at Mines ParisTech. It is called the "Balistic Game" : two war-engines are confronting to one another and the first able to destroy the other wins. It has been designed in Java

saroudant/bonito

A PyTorch Basecaller for Oxford Nanopore Reads

saroudant/cellrank

CellRank for directed single-cell fate mapping

saroudant/DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.

saroudant/Euler-Project

Some results on the Euler Project

saroudant/Preparatory-Class-Projects

You will find there my personnal projects made during my two years of prepatory class. The first one simulates a Black-Jack game and answers the question : are counting cards systems worth it ? (the answer is yes). The second one is more physics oriented. It simulates graphically and analytically a chemical reaction of diffusion known as Belouzov-Zhabothinsky reaction. This model uses the works of the Oregonator project.

saroudant/Research-project-diffusion-network

During my first year of master I have developed a software that enable to uncover a network given the knowledge of cascades. I adapted the work of other researchers for two cases : one single infection (cf. J.Leskovec's work) and plural infections.

saroudant/scikit-learn

scikit-learn: machine learning in Python

saroudant/ecosystem-packages

Registry for scverse ecosystem packages

saroudant/PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

saroudant/remora

Methylation/modified base calling separated from basecalling.

saroudant/scvi-tools

Deep probabilistic analysis of single-cell omics data

saroudant/transferlearning

Resources and codes about transfer learning and domain adaptation--迁移学习