satijalab/azimuth-references

Error in eval(predvars, data, env) : object 'log_umi' not found

Tycooner opened this issue · 1 comments

Tycooner commented

when I run the step:
query <- SCTransform(

  • object = query,
  • assay = "RNA",
  • new.assay.name = "refAssay",
  • residual.features = rownames(x = reference$map),
  • reference.SCT.model = reference$map[["refAssay"]]@SCTModel.list$refmodel,
  • method = 'glmGamPoi',
  • ncells = 2000,
  • n_genes = 2000,
  • do.correct.umi = FALSE,
  • do.scale = FALSE,
  • do.center = TRUE
  • )
    it occurs the errors: Error in eval(predvars, data, env) : object 'log_umi' not found

image
what is the reason? i need help!!

FourAlarmFire commented

I also met the issue, did you resolve it ?