Pinned Repositories
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
azimuth
A Shiny web app for mapping datasets using Seurat v4
azimuth-references
hdWGCNA
High dimensional weighted gene co-expression network analysis
statnet.common
Common R Scripts and Utilities Used by the Statnet Project Software
Stereopy
A toolkit of spatial transcriptomic analysis.
SingleCell
sicelore-2.1
ktplotspy
Python library for plotting Cellphonedb results. Ported from ktplots R package.