Issues
- 1
`MetacellsByGroups`
#300 opened by zznx - 6
How to use MetacellsByGroups?
#301 opened by zznx - 8
- 3
Installation Problem
#302 opened by LisaBlackmer - 1
Annotations for Visium 10x data in spatial vignette
#297 opened by sandcell10 - 1
Error in Tutorial Test
#303 opened by YunzeZhang19 - 2
no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')
#296 opened by DLY-2021 - 2
ModuleRadarPlot
#293 opened by joe-jhou2 - 4
- 3
Error in ProjectModuleNames(): No genes found
#295 opened by YenTrangHoang - 8
NormalizeMetacells
#298 opened by zznx - 1
ModuleNetworkPlot
#299 opened by dorothyzh - 2
Modules across all cell types
#284 opened by sandcell10 - 4
Error in UseMethod(generic = "JoinLayers", object = object) : no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')"
#261 opened by Jxuanrui - 5
- 2
Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type
#294 opened by Sara-Tavallaei - 1
HdWGCNA for single Cell ATACseq
#292 opened by feanaros - 0
Error in motifscan hdwgcna
#291 opened by nitinsai1 - 3
Does it make sense to compare two levels of a variable (with 4 level) in one level of another variable(with two levels) using DME
#288 opened by pariaaliour - 4
Module Correlogram
#283 opened by Rahul1711arora - 4
Is metacell construction necessary?
#280 opened by Tamalikaaa18 - 1
MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length"
#290 opened by MJD-BlanckGroup - 2
SetupForWGCNA: Error in cur[cur > 0] <- 1 : object of type 'S4' is not subsettable
#289 opened by Dazcam - 1
Error in checkSets(MEs, checkStructure = TRUE, useSets = useSets) : No data given.
#287 opened by Dazcam - 2
Seeking parameter suggestions for hdwgcna
#285 opened by xjyenjoy81 - 1
Compatibility of hdWGCNA with Visium HD Data
#286 opened by wnddl111 - 2
DME vs module trait correlation?
#279 opened by pariaaliour - 3
- 2
- 5
- 1
Question about K value in MetacellsByGroups
#272 opened by RafaellaFerraz - 5
- 3
Error in `::`(., dplyr, distinct) : 3 arguments passed to '::' which requires 2
#277 opened by Xiaojingzhe - 2
dplyr error in PlotModuleTraitCorrelation()
#276 opened by jhb1980 - 2
Best way to skip Metacell construction
#273 opened by austinschubert - 1
Error running `ConstructNetwork()`
#274 opened by jhb1980 - 5
- 3
ConstructNetwork() and ModuleEigengenes() functions use different methods to calculate the ME (module eigengene), leading to the discrepancy in the kME result
#266 opened by erlun1 - 9
- 3
- 2
Incompatibility of plots, probably with dplyr
#268 opened by SamueleSoraggi - 2
Advice for the workflow, cell type subset analysis, pseudobulk, and running on large datasets
#258 opened by MaximilianNuber - 2
Using normalized count for MetacellsByGroups
#260 opened by jeji0209 - 2
Question about Module Eigengene Loadings
#262 opened by ofarrelle - 2
Whether to include all conditions or a subset
#263 opened by ShadHOH - 2
error in ModuleEigengenes module in version 0.3
#264 opened by xiesiqiu - 4
Question about pct.1 and pct.2 from FindDMEs
#259 opened by DelongZHOU - 4
Question about interpreting kME
#256 opened by DelongZHOU - 3
TOM would not update
#257 opened by DelongZHOU - 0