zznx

Pinned Repositories

pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Language:Python470 19 555186
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Language:Jupyter Notebook204 10 36337
bowtie2
A fast and sensitive gapped read aligner
Language:C++692 33 436161
solo
software to detect doublets
Language:Python88 8 5713
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Language:R348 2 29655
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
Language:R463 29 436178
seurat
R toolkit for single cell genomics
Language:R2.4k 76 8.1k931
SingleR
Clone of the Bioconductor repository for the SingleR package.
Language:R182 12 22419
hdWGCNA
High dimensional weighted gene co-expression network analysis
Language:R376 5 34235
TRF
Tandem Repeats Finder: a program to analyze DNA sequences
Language:C00

zznx/TRF
Tandem Repeats Finder: a program to analyze DNA sequences
Language:C00