zznx

Pinned Repositories

• pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python45918547185

• scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1921035332

• bowtie2

  A fast and sensitive gapped read aligner

  Language:C++68432434160

• solo

  software to detect doublets

  Language:Python8685713

• scWGCNA

  scWGCNA

  Language:HTML5631910

• CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

  Language:R320226654

• TwoSampleMR

  R package for performing 2-sample MR using MR-Base database

  Language:R44929428177

• seurat

  R toolkit for single cell genomics

  Language:R2.3k768.1k922

• SingleR

  Clone of the Bioconductor repository for the SingleR package.

  Language:R1791222219

• hdWGCNA

  High dimensional weighted gene co-expression network analysis

  Language:R371533336

zznx's Repositories