/spatiocyte-core

Multithreaded Standalone Spatiocyte

Primary LanguageC++

spatiocyte-core

A SIMD (Intel AVX2) standalone Spatiocyte package.

  1. Get spatiocyte-core

  2. Install Randomlib from http://sourceforge.net/projects/randomlib/files/distrib/

    • $ tar xzvf RandomLib-1.8.tar.gz
    • $ cd RandomLib-1.8
    • $ mkdir BUILD
    • $ cd BUILD
    • $ CXXFLAGS="-O3 -march=corei7" CFLAGS="-O3 -march=corei7" cmake -DCMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=$HOME/root ..
    • $ make
    • $ make test
    • $ make examples
    • $ cd examples
    • $ ./RandomTime
    • $ cd ..
    • $ make install

  3. Compile spatiocyte-core

    • update include path in Makefile (-I/usr/include/x86_64-linux-gnu/c++/5.2.1)
    • $ make (or 'make -jx' with x the number of available CPU cores)

  4. Run spatiocyte-core

    • $ ./spatiocyte-core

  5. Visualize logged data

    • $ ./visualizer