/fast_bed_sort

Sorting large bed files by chromosome splitting

Primary LanguagePython

fast_bed_sort

Sorting large bed files by chromosome splitting

snakemake -np  --snakefile sort_bed_by_chrom.smk sorted/reps_combined.bed.gz --configfile configs/config.yaml -j3

Chromosome order

It is important to note that chromosome order in metadata/chrom_selection.tsv should be exactly in a way sort command works on chromosome names.