sauuyer

CWML-class-Single-cell-RNA-seq-analysis-tutorial-Seurat

actigraphy_data_processing

anndata-workflows

labarchives-usage-report

Med-Lib-Data-Classes

Class slides and supplemental materials for research data oriented classes at Yale University's Cushing/Whitney Medical Library

mimic-exploration

unix-shell-working-with-data

Class materials used during the Cushing/Whitney Medical Library information session that details how to perform data / file management tasks using commands run through the Unix Shell.

working-with-data-in-r

YODA-project-visualization

This R code processes metadata from the Yale Open Data Access Project and visualize it in an igraph network in an attempt to get a sense for how clinical trial data is reused and what it is used for.

sauuyer/Med-Lib-Data-Classes

Class slides and supplemental materials for research data oriented classes at Yale University's Cushing/Whitney Medical Library

sauuyer/anndata-workflows

sauuyer/labarchives-usage-report

sauuyer/mimic-exploration

sauuyer/unix-shell-working-with-data

Class materials used during the Cushing/Whitney Medical Library information session that details how to perform data / file management tasks using commands run through the Unix Shell.

sauuyer/actigraphy_data_processing

sauuyer/working-with-data-in-r

sauuyer/anndata-scirpy-troubleshooting

sauuyer/balanced_citer

This python script guesses the race and gender (probabilistically) of the first and last authors for papers in your citation list (in the form of a .bib file) and compares your list to expected distributions based on a model that accounts for paper characteristics (e.g., author location, author seniority, journal, et cetera.) unrelated to race and gender.

sauuyer/BioConductor-Class--Dev-

sauuyer/bioconductor-training

sauuyer/cleanBib

Probabilistically assign gender and race proportions of first/last authors pairs in bibliography entries

sauuyer/clinical-search-assessment-report

sauuyer/conversion_tofix

Exercise for Advanced git tutorial

sauuyer/CWML-Research-Data-Management-Office-Hours

This repo contains supporting materials for an online whiteboard for questions related to research data and research data management (RDM). This website supports RDM Office Hours provided through Yale's Cushing/Whitney Medical Library's Data Services.

sauuyer/efetch-xml-parsing

sauuyer/getting-started-with-python

a non-programming introduction

sauuyer/ifcb-parsing-processing

sauuyer/ifcbdb_cgsnpublic

IFCB dashboard (OOI Public)

sauuyer/intro-to-r-for-seurat

bioinformatics-class-support-md-host

sauuyer/introduction-to-r

These are the materials used during the Cushing/Whitney Medical Library information session "Introduction to R"

sauuyer/ooicgsn-asset-management

Asset Management

sauuyer/Pioneer_MAB_AIS

sauuyer/planets

sauuyer/python-and-omics-data

Practice solving problems in python, and an introduction to Rosalind

sauuyer/python-practice-projects

sauuyer/research-guide-link-checker

These scripts check the http status codes of research guides

sauuyer/ris-file-transformations

Scripts that work with RIS file reshaping

sauuyer/spooky-r-class-materials

These are the materials used during the Cushing/Whitney Medical Library information session "Analyzing Haunted Places Using R, a Library Trick {R} Treat."

sauuyer/tiny_python_projects

Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.