savitaj
“Learning is not attained by chance. It must be sought for with ardor and attended with diligence.” – Abigail Adams
Bangalore/Sunnyvale
Pinned Repositories
Bash-scripts
Scrpits to help with NGS Analysis
clustergrammer
An interactive heatmap visualization built using D3.js
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Docker-files
immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
maxquant-pipeline
MaxQuant Automated Pipeline
Perl-scripts
pMTnet
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
Python-scripts
R-scripts
Example scripts written in R for single-cell data analysis using Seurat and SingleR packages
savitaj's Repositories
savitaj/Bash-scripts
Scrpits to help with NGS Analysis
savitaj/Docker-files
savitaj/Perl-scripts
savitaj/Python-scripts
savitaj/R-scripts
Example scripts written in R for single-cell data analysis using Seurat and SingleR packages
savitaj/clustergrammer
An interactive heatmap visualization built using D3.js
savitaj/DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
savitaj/immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
savitaj/maxquant-pipeline
MaxQuant Automated Pipeline
savitaj/pMTnet
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
savitaj/proteomics-metadata-standard
The Sample to Data file format for Proteomics
savitaj/PTXQC
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
savitaj/PythonProteomics
A collection of available Python tools for Proteomics analysis
savitaj/SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
savitaj/velocyto.R
RNA velocity estimation in R