Batch upload bam files to NCBI SRA using aspera
- For a single file, use /scripts/sra_ascp script
sra_ascp -h for help
- For batch files:
- Prepare samples/files_to_upload.tsv file with absolute local path of a file to be uploaded, one per row.
- Modify runner/array_sra_ascp.qsub script for your user environment to submit array job.
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