Pinned Repositories
coronavirus-knowledge-graph
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)
kg-import
kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.
kg-onto
Create Node and Relationship files from BioPortal ontologies for import into Property Graphs
mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
mmtf-proteomics
Methods for mapping proteomics data on 3D protein structure.
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
mmtf-spark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
mmtf-workshop-2017
Structural Bioinformatics Training Workshop & Hackathon 2017
mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
neo4j-ipycytoscape
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
Structural Bioinformatics Laboratory's Repositories
sbl-sdsc/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
sbl-sdsc/mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
sbl-sdsc/mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
sbl-sdsc/mmtf-spark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
sbl-sdsc/coronavirus-knowledge-graph
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)
sbl-sdsc/mmtf-workshop-2017
Structural Bioinformatics Training Workshop & Hackathon 2017
sbl-sdsc/mmtf-proteomics
Methods for mapping proteomics data on 3D protein structure.
sbl-sdsc/mmtf-hackathon-2018
Hackathon projects repository for MMTF Workshop 2018
sbl-sdsc/metal-binding-prediction
Methods to predict metal binding sites in a protein by its amino acid sequence
sbl-sdsc/biojava-notebooks
BioJava examples in Jupyter Notebooks
sbl-sdsc/df-parallel
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
sbl-sdsc/kg-import
kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.
sbl-sdsc/neo4j-ipycytoscape
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
sbl-sdsc/mm-dev
Repository for the development of new methods for the mmtf-spark project
sbl-sdsc/QuickStructureSearch
Obsolete student projects: Methods for fast structural database searches and clustering
sbl-sdsc/structurecodec
Obsolete project: Provides high-density compression and decompression of biomolecular structures.
sbl-sdsc/kg-bio
Download and processes Biological Repositories for ingestion into Knowledge Graphs
sbl-sdsc/kg-onto
Create Node and Relationship files from BioPortal ontologies for import into Property Graphs
sbl-sdsc/mexico-boundaries
GeoPandas GeoDataFrames for Mexican States and Municipalities
sbl-sdsc/sifts-columnar
Benchmark and demo of representing SIFTS UniProt to PDB mappings in columnar data formats.
sbl-sdsc/mmtf-benchmark
Benchmark mmtf compression/decompression
sbl-sdsc/mmtf-data
Data files for mmtf projects
sbl-sdsc/mmtf-pyspark-benchmarks
Benchmarks for mmtf-pyspark project
sbl-sdsc/sars-cov-2-variants
SARS-CoV-2 Variant metadata