Pinned Repositories
ggdisplot
Scatter plot with two density plots.
graphcompare
Command-line application to compare graph (DOT/graphviz and TBL) files.
microworld
the game that will change it all
minineedle
Needleman-Wunsch and Smith-Waterman algorithms in python
ppaxe
Text mining tool to retrieve protein-protein interactions from the scientific literature.
pytest-tagging
pytest plugin that allows tagging tests using arbitrary strings
RPGeNet
Retinitis Pigmentosa gene interaction network website.
seqlenplot
R script to plot a comparison of protein and transcript/DNA length.
TransPipe
Scripts to predict the PlanNET networks.
word_cloud
Create word clouds from articles
scastlara's Repositories
scastlara/minineedle
Needleman-Wunsch and Smith-Waterman algorithms in python
scastlara/ppaxe
Text mining tool to retrieve protein-protein interactions from the scientific literature.
scastlara/pytest-tagging
pytest plugin that allows tagging tests using arbitrary strings
scastlara/TransPipe
Scripts to predict the PlanNET networks.
scastlara/ggdisplot
Scatter plot with two density plots.
scastlara/RPGeNet
Retinitis Pigmentosa gene interaction network website.
scastlara/seqlenplot
R script to plot a comparison of protein and transcript/DNA length.
scastlara/ppaxe-app
Web application for retrieving protein-protein interactions using ppaxe
scastlara/academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
scastlara/cachetory
Caching library with support for multiple cache backends
scastlara/CGL
Generic modules for the Computational Genomics Lab
scastlara/cv
cv made with dev resume
scastlara/django-sql-explorer
Easily share data across your company via SQL queries. From Grove Collab.
scastlara/django_dramatiq
A Django app that integrates with Dramatiq.
scastlara/dotfiles
My config files
scastlara/Graphs-Degree
Perl module that sorts the nodes of a graph by degree.
scastlara/miniseq
Tiny python package to handle sequences and FASTAs
scastlara/NanoPlot
Plotting scripts for long read sequencing data
scastlara/netcutter
Disentangle protein-protein interaction networks using a list of genes as drivers.
scastlara/netcutter-web
scastlara/PlanExp-protocols
Protocols for the analyses performed for the PlanExp web application.
scastlara/PlanNET
Website to explore predicted planarian protein-protein interactions.
scastlara/R_tricks
Snippets to remember
scastlara/refcoords.js
Simple javascript to plot sequences/domains/something onto a reference
scastlara/RPGeNet-hiveplots
Code for RPGeNet hiveplots
scastlara/scastlara
Config files for my GitHub profile.
scastlara/scastlara.github.io
scastlara/scastlaraold.github.io
scastlara/vim-find-highlight
Quickly go to words with vim f command (VSCode extension)
scastlara/wait-for-it
Wait for service(s) to be available before executing a command.