Pinned Repositories
170110
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
f-scLVM
henipipe
Pipeline for CnR, CnT
m3addon
mergeBams
Merge bam files with intelligent cell barcode preservation
piperna
Making bulk RNA seq analysis easier
seqGlue
viewmaster
virtualArray
scfurl's Repositories
scfurl/henipipe
Pipeline for CnR, CnT
scfurl/m3addon
scfurl/mergeBams
Merge bam files with intelligent cell barcode preservation
scfurl/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
scfurl/piperna
Making bulk RNA seq analysis easier
scfurl/seqGlue
scfurl/viewmaster
scfurl/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
scfurl/arrayfire
scfurl/ChIPQC
scfurl/CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
scfurl/COMETSC
COMET Single-Cell Marker Detection tool
scfurl/conga
Clonotype Neighbor Graph Analysis
scfurl/data_etc
repo for some data files
scfurl/differ
Differ is a rust library for finding the differences between two sequences.
scfurl/kgraph
A library for k-nearest neighbor search
scfurl/lassonet
Feature selection in neural networks
scfurl/mutCaller
call mutations in 10X data
scfurl/NHPTregIL2
Analysis of IL2 NHP Treg data
scfurl/qsubr
scfurl/rcpparrayfire
R and ArrayFire library via Rcpp
scfurl/scATACutils
R/Bioconductor package for working with 10x scATACseq data
scfurl/scCUT-Tag
scfurl/scRepertoire
A toolkit for single-cell immune profiling
scfurl/SEACR
SEACR: Sparse Enrichment Analysis for CUT&RUN
scfurl/sinto
Tools for single-cell data processing
scfurl/SnapTools
A module for working with snap files in Python
scfurl/souporcell
Clustering scRNAseq by genotypes
scfurl/Vennerable
Old code
scfurl/WAT3R
Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)