Pinned Repositories
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
Connectome
cross-species-PBMCs
DNBelab_C_Series_scRNA-analysis-software
An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
GENIE3
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
matlab-storm
GUIs and functions for analyzing STORM data in MATLAB
NCE
Yingshi New Concept English
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
SCORPIUS
Trajectory inference for single-cell RNA-seq
schengcheng's Repositories
schengcheng/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
schengcheng/CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
schengcheng/Connectome
schengcheng/cross-species-PBMCs
schengcheng/DNBelab_C_Series_scRNA-analysis-software
An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
schengcheng/GENIE3
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
schengcheng/matlab-storm
GUIs and functions for analyzing STORM data in MATLAB
schengcheng/NCE
Yingshi New Concept English
schengcheng/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
schengcheng/SCORPIUS
Trajectory inference for single-cell RNA-seq
schengcheng/scRNA.seq.course
Analysis of single cell RNA-seq data course
schengcheng/velocyto.R
RNA velocity estimation in R