FABM-hereon

This is a collection of FABM ports of the GOTM light model with horizontal parameter variation and the OmexDia model.

How to build

This code must be compiled together with FABM. To do this, provide the following additional arguments to cmake when you build FABM: -DFABM_INSTITUTES=hereon -DFABM_HEREON_BASE=</path/to/fabm-hereon>

Here, </path/to/fabm-hereon> is the directory with the FABM-hereon code (the same directory that contains this ReadMe file). Note that -DFABM_INSTITUTES=hereon will make FABM compile OmexDia and light as the only available biogeochemical models. If you additionally want to have access to other biogeochemical models included with FABM, you can set FABM_INSTITUTES to a semi-colon separated list, e.g., -DFABM_INSTITUTES="hereon;iow" (to prevent the shell from interpreting the semi-colons, you typically have to enclose this list with quotes).

For instance, to use hereon models with the latest stable release of the Semi-implicit Cross-scale Hydroscience Integrated System Model (SCHISM), do the following:

git clone --recurse-submodules -b v5.11.1 https://github.com/schism-dev/schism.git schism
git clone https://github.com/fabm-model/fabm.git
git clone https://github.com/schism-dev/fabm-hereon.git
mkdir build
cd build
cmake ../schism/src -DBLD_STANDALONE=ON -DUSE_FABM=ON -DFABM_BASE=../fabm -DFABM_INSTITUTES=hereon -DFABM_HEREON_BASE=../fabm-hereon
make pschism

This will create the pschism executable with support for FABM light and omexdia.