bug: marker and chromosome position coordinates become wrong

[KewinOgink]

Hey,
I want to zoom into a region and then also show markers.
I use your example data with

genomes

TAIR10_Filtered.chrlen	col-0	ft:cl;lw:1.5
ler.chrlen	ler	ft:cl;lw:1.5

and markers

#chr	start	end genome_id	tags
Chr1	5000000	10000000	col-0	mt:_;mc:red;ms:10;tt:Marker1;tp:0.02;ts:8;tf:DejaVu Sans;tc:black
Chr1	5000000	15000000	ler	mt:_;mc:black;ms:1;tt:Marker2;tp:0.02;ts:8;tf:DejaVu Sans;tc:black

then I run this, with region from 1bp to 20Mb

plotsr --sr col_lersyri.filtered.out --genomes genomes.txt -S 1 -o tmp.png -W 7 -H 4 -f 8 --markers markers.bed --reg col-0:Chr1:1-20000000

then I run the same but starting at 2.5Mb

plotsr --sr col_lersyri.filtered.out --genomes genomes.txt -S 1 -o tmp.png -W 7 -H 4 -f 8 --markers markers.bed --reg col-0:Chr1:2500000-20000000

and get this.

If I ignore the thickness of marker 1, still the markers coordinates from 5-10 and 5-15Mb do not align with the coordinates on the x-axis. How do I know which is correct and is there a fix for this?

[mnshgl0110]

Should be fixed by 2b1fde0

[KewinOgink]

awesome thanks a lot!