schneebergerlab/plotsr

Issues

• alternative for syri

  #85 opened 3 months ago by onbio
  2

• why there are two kinds of line in the tracks related to gene density?

  #83 opened 4 months ago by futurefanzhang
  2

• Multiple genomes are aligned to the same genome

  #84 opened 4 months ago by MinjaYuan
  1

• How to set parameters to avoid the problem of incomplete start and end display？

  #77 opened 5 months ago by felixlee0608
  1

• --nosyn didnt work

  #76 opened 5 months ago by jurin0811
  1

• Error while reading GFF file

  #52 opened 2 years ago by mnshgl0110
  7

• use for protein sequences

  #38 opened 5 months ago by LandiMi2
  2

• How can I add DIY Annotation Legend?

  #82 opened 6 months ago by linyuiz
  0

• Code improvements

  #81 opened 6 months ago by hyBio
  2

• list index out of range

  #79 opened 6 months ago by zhangyixing3
  2

• Is there a way to compare mutiple assemblies to a reference genome?

  #80 opened 6 months ago by mariaelf97
  10

• Order plot

  #78 opened 6 months ago by fergsc
  2

• Labels to the left of each assembly

  #74 opened 7 months ago by scottcain
  2

• Set chromosome length axis

  #69 opened 7 months ago by annerilotter
  4

• How is track height determined?

  #67 opened 7 months ago by KewinOgink
  4

• zoom problem with unequal chromosome lengths?

  #75 opened 8 months ago by KewinOgink
  1

• the 'genome_id' in markers.bed

  #43 opened 8 months ago by iehfdshgkjzh
  3

• ImportError: For chromosome ID: Hic3, length in genome fasta: genome.txt is less than the maximum coordinate in the structural annotation file: syri.out. Exiting.

  #70 opened 8 months ago by wangguiqian
  1

• Getting pixel coordinates/feature relationships/building an imagemap

  #73 opened a year ago by scottcain
  3

• Plotting chromosome fusion

  #71 opened a year ago by kashiff007
  2

• bug: marker and chromosome position coordinates become wrong

  #72 opened a year ago by KewinOgink
  2

• ValueError when running plotsr function

  #68 opened a year ago by ngorringe
  2

• Installation issue following recommended installation instructions

  #59 opened a year ago by smorzechowski
  1

• Question about output

  #61 opened a year ago by mylena-s
  1

• Sizes between inversions do not correspond across the genome

  #56 opened a year ago by JAEYOONSUNG
  6

• colour to non-aligned region

  #60 opened a year ago by mnshgl0110
  5

• tracks error

  #62 opened a year ago by Hemaprasanth24
  2

• Can i plot the centromere region?

  #64 opened a year ago by lly1214
  1

• ValueError: tt is not a valid tag

  #66 opened a year ago by hushaoqiang
  2

• cannot plot all the information from syri.out file

  #65 opened a year ago by Hemaprasanth24
  6

• Only the SNPs are being displayed

  #63 opened a year ago by hedy-ella
  8

• possible bug for tracks: all chromosomes need to be in the track list

  #53 opened a year ago by KewinOgink
  11

• index out of range while reading syri output

  #49 opened a year ago by mnshgl0110
  1

• syntenic links have no color

  #46 opened a year ago by Zefeng-Wu
  2

• Error with marker specification

  #58 opened a year ago by mylena-s
  3

• Chromosome ID not present in genome fasta

  #57 opened 2 years ago by adriandrr
  2

• Error in genomes.txt

  #55 opened 2 years ago by mnshgl0110
  4

• plotrs -R doesn't work

  #45 opened 2 years ago by YingLiPUMC
  2

• A running problem about two genomes with relatively large size differences (~850M vs ~650M)

  #54 opened 2 years ago by Wenwen012345
  3

• Is it possible to visualize all SyRI SVTYPEs?

  #47 opened 2 years ago by KewinOgink
  1

• Straight Line instead curve line between genes

  #51 opened 2 years ago by awesomedeer
  2

• Problem with the track file

  #50 opened 2 years ago by m-bogaerts
  3

• Custom alignment colors do not show

  #48 opened 2 years ago by lgozasht
  2

• feature suggestion: using different shades of color to show sequence identity differences across different homologous blocks

  #44 opened 2 years ago by yjx1217
  3

• error while trying to add track

  #40 opened 2 years ago by ylevmirom
  11

• How to get high-definition pictures

  #37 opened 2 years ago by zhoudreames
  1

• Plot feature tracks for the query genomes as well?

  #42 opened 2 years ago by yjx1217
  2

• Customizing the color code used for representing different input genomes

  #41 opened 2 years ago by yjx1217
  2

• Error importing pysam.

  #39 opened 2 years ago by bijendrabio
  3

• Getting exact coordinates in an inversion/insertion region in a chromosome

  #36 opened 2 years ago by LandiMi2
  5