Pinned Repositories
Chado
the GMOD database schema
gmod.github.io
GMOD Website, derived from gmod.github.io
sars-cov-2-jbrowse
Repo for storing dockerfile and config for a coronavirus genome browser
GMODintheCloud
MotifFinder
Port of the MotifFinder plugin to JBrowse plugin
RemoveGridOption
JBrowse plugin to add a menu item for toggling gridlines
RestrictionSearch
Restriction enzyme search plugin for JBrowse
seqpanel
stand alone seq panel that highlights subfeatures
amplify-wb-jbrowse2
An AWS Amplify oriented repo for building WormBase's JBrowse 2
website-jbrowse-gff
Dockerfile for processing GFF data for JBrowse
scottcain's Repositories
scottcain/RemoveGridOption
JBrowse plugin to add a menu item for toggling gridlines
scottcain/seqpanel
stand alone seq panel that highlights subfeatures
scottcain/alliance_test_seqpanel
simple test app for GenericGeneSeqPanel with Alliance data
scottcain/amplify-test
testing with aws amplify
scottcain/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin
scottcain/azure-mud
scottcain/colorbycds
A JBrowse plugin to color the features and DNA track according the coding frame
scottcain/containers
Bioinformatics containers
scottcain/crav4
scottcain/docker-tripal
Docker container for Tripal
scottcain/flybase-jbrowse
Demo JBrowse docker config for FlyBase
scottcain/get-fasta-sequence
web app for getting fasta sequences from a bgzipped fasta file
scottcain/jbrowse
A modern genome browser built with JavaScript and HTML5.
scottcain/jbrowse-components
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
scottcain/jbrowse-hg19
Simple JBrowse instance that serves the hg19 (human) gene set
scottcain/jbrowse-jupyter-examples
Example jupyter notebooks that use JBrowse
scottcain/jbrowse-plugin-list
List of plugins for the JBrowse 2 plugin store.
scottcain/jbrowse-proxy
Proxy to avoid CORS issues
scottcain/jbrowse-site-specific-help
A JBrowse 2 plugin to make a site specific help widget
scottcain/jbrowse_genomes_of_interest
scottcain/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
scottcain/manet-dockerfile
A dockerized image of https://github.com/vbauer/manet
scottcain/MotifSearch
A PWM search plugin for JBrowse
scottcain/rclone
"rsync for cloud storage" - Google Drive, Amazon Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Cloudfiles, Google Cloud Storage, Yandex Files
scottcain/react-pwm
test project for creating a react front end for a position weight matrix calculator
scottcain/recreation-gov-campsite-checker
Scrapes the recreation.gov website to check for campsite availabilities 🏕🏕
scottcain/SARS-CoV-2
Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures
scottcain/scottcain
My config repo
scottcain/website-nclist
Creating a page to return overlapping genes for a location
scottcain/zfin-jbrowse
JBrowse configs to replication GBrowse functionality