Generic Model Organism Database Project

Pinned Repositories

Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Language:Groovy129 37 1.9k85
bam-js
Parse BAM and BAM index files in javascript for node and the browser
Language:TypeScript21 14 399
Chado
the GMOD database schema
Language:PLpgSQL38 28 8525
GBrowse
the Generic Genome Browser
Language:Perl49 22 3937
jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Language:JavaScript463 52 1.3k199
jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
Language:TypeScript211 21 2k63
jbrowse-jupyter
A python package for showing JBrowse views
Language:Python23 19 224
JBrowseR
R interface to the JBrowse 2 Linear Genome View.
Language:R35 11 303
react-msaview
A multiple sequence alignment viewer
Language:TypeScript18 11 561
vcf-js
High performance Variant Call Format (VCF) parser in pure JavaScript
Language:TypeScript24 14 215

Generic Model Organism Database Project's Repositories

GMOD/jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
Language:TypeScript211 21 2k63
GMOD/vcf-js
High performance Variant Call Format (VCF) parser in pure JavaScript
Language:TypeScript24 14 215
GMOD/bam-js
Parse BAM and BAM index files in javascript for node and the browser
Language:TypeScript21 14 399
GMOD/cram-js
Read CRAM v3 and v2 in node or in the browser
Language:TypeScript18 13 319
GMOD/react-msaview
A multiple sequence alignment viewer
Language:TypeScript18 11 561
GMOD/tabix-js
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
Language:TypeScript14 15 435
GMOD/indexedfasta-js
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
Language:TypeScript12 12 224
GMOD/bbi-js
Parser for bigwig and bigbed files
Language:TypeScript8 14 216
GMOD/Apollo3
JBrowse 2 plugin for editing annotations on an Apollo server
Language:TypeScript7 20 2484
GMOD/bgzf-filehandle
Nodejs filehandle for reading bgzip+.gzi compressed files
Language:TypeScript7 15 124
GMOD/abortable-promise-cache
add AbortController support to a cache of async requests
Language:TypeScript6 11 22
GMOD/generic-filehandle
use a subset of the NodeJS promise-based file handle API to access both local and remote files
Language:TypeScript4 12 306
GMOD/twobit-js
Read .2bit files with pure JS. Works in node or webpack.
Language:TypeScript4 15 72
GMOD/jbrowse-react-app-nextjs-demo
Language:TypeScript1 3 2
GMOD/jbrowse-react-linear-genome-view-nextjs-demo
Language:TypeScript1 3 21
GMOD/gmod.github.io
GMOD Website, derived from gmod.github.io
Language:HTML0 13 01
GMOD/trix-js
Read UCSC Trix indexes in pure JavaScript
Language:TypeScript0 19 22
GMOD/generic-filehandle2
modernization of the original generic-filehandle, no Buffer polyfill needed
Language:TypeScript
GMOD/jbrowse-plugin-protein3d
3D protein structure visualizer in jbrowse 2 - WIP
Language:TypeScript2 9
GMOD/jbrowse-react-app-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-app-farm-demo
Language:TypeScript1 0
GMOD/jbrowse-react-app-rsbuild-demo
Language:TypeScript
GMOD/jbrowse-react-app-vite-demo
Language:TypeScript3 1
GMOD/jbrowse-react-circular-genome-view-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-circular-genome-view-nextjs-demo
Language:TypeScript3 0
GMOD/jbrowse-react-linear-genome-view-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-linear-genome-view-farm-demo
Language:TypeScript1 0
GMOD/jbrowse-react-linear-genome-view-rsbuild-demo
Language:TypeScript
GMOD/jbrowse-react-linear-genome-view-vite-demo
Language:TypeScript3 11
GMOD/nclist-js
Read JBrowse v1 nested containment list feature stores from modern JS
Language:TypeScript12 1