Generic Model Organism Database Project

Pinned Repositories

Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Language:Groovy123 37 1.9k85
bam-js
Parse BAM and BAM index files in javascript for node and the browser
Language:TypeScript17 14 389
Chado
the GMOD database schema
Language:PLpgSQL34 28 8525
cram-js
Read CRAM v3 and v2 in node or in the browser
Language:TypeScript18 13 269
GBrowse
the Generic Genome Browser
Language:Perl49 22 3937
jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Language:JavaScript459 52 1.3k199
jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
Language:TypeScript190 21 1.9k60
jbrowse-jupyter
A python package for showing JBrowse views
Language:Python23 19 223
JBrowseR
R interface to the JBrowse 2 Linear Genome View.
Language:R34 11 293
vcf-js
High performance Variant Call Format (VCF) parser in pure JavaScript
Language:TypeScript23 14 215

Generic Model Organism Database Project's Repositories

GMOD/jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Language:JavaScript459 52 1.3k199
GMOD/jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
Language:TypeScript190 21 1.9k60
GMOD/Chado
the GMOD database schema
Language:PLpgSQL34 28 8525
GMOD/JBrowseR
R interface to the JBrowse 2 Linear Genome View.
Language:R34 11 293
GMOD/cram-js
Read CRAM v3 and v2 in node or in the browser
Language:TypeScript18 13 269
GMOD/bam-js
Parse BAM and BAM index files in javascript for node and the browser
Language:TypeScript17 14 389
GMOD/tabix-js
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
Language:TypeScript14 15 425
GMOD/react-msaview
A multiple sequence alignment viewer
Language:TypeScript13 11 491
GMOD/bbi-js
Parser for bigwig and bigbed files
Language:TypeScript7 14 216
GMOD/bgzf-filehandle
Nodejs filehandle for reading bgzip+.gzi compressed files
Language:TypeScript7 15 124
GMOD/Apollo3
JBrowse 2 plugin for editing annotations on an Apollo server
Language:TypeScript5 19 1964
GMOD/bed-js
A parser for the BED format including autoSql support
Language:TypeScript5 10 31
GMOD/ucsc-hub-js
read and write UCSC track and assembly hub files in node or the browser
Language:TypeScript5 15 92
GMOD/generic-filehandle
use a subset of the NodeJS promise-based file handle API to access both local and remote files
Language:TypeScript4 12 296
GMOD/jbrowse-plugin-template
Template to quickly start a new JBrowse 2 plugin
Language:TypeScript4 16 24
GMOD/jbrowse-plugin-msaview
multiple sequence alignment browser plugin for JBrowse 2
Language:TypeScript3 16 22
GMOD/faidx-js
Index a FASTA file similar to `samtools faidx` using pure js
Language:TypeScript2 16 1
GMOD/jbrowse-plugin-protein3d
3D protein structure visualizer in jbrowse 2 - WIP
Language:TypeScript2 9
GMOD/jbrowse-react-app-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-app-nextjs-demo
Language:TypeScript3 1
GMOD/jbrowse-react-app-vanillajs-demo
Language:JavaScript14 0
GMOD/jbrowse-react-app-vite-demo
Language:TypeScript3 0
GMOD/jbrowse-react-circular-genome-view-cra4-demo
Language:TypeScript3 0
GMOD/jbrowse-react-circular-genome-view-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-circular-genome-view-nextjs-demo
Language:TypeScript3 0
GMOD/jbrowse-react-linear-genome-view-cra4-demo
Language:TypeScript3 0
GMOD/jbrowse-react-linear-genome-view-cra5-demo
Language:TypeScript3 0
GMOD/jbrowse-react-linear-genome-view-nextjs-demo
Language:TypeScript3 01
GMOD/jbrowse-react-linear-genome-view-vite-demo
Language:TypeScript3 01
GMOD/librpc-web
Promise-based RPC client and server for web workers
Language:TypeScript2 01