GMOD/jbrowse-components

Issues

• Color by modifications option ignores BAM reverse reads

  #4629 opened 21 days ago by shaperones
  4

• Hi-C track: normalization and resolution

  #4611 opened 21 days ago by cmdcolin
  0

• Allow configuring default resolution for bigwig files

  #4618 opened 22 days ago by cmdcolin
  1

• Resizing synteny view vertically redraws mouseover without clearing screen

  #4625 opened 22 days ago by cmdcolin
  0

• Add new row to multi-way synteny view

  #4623 opened a month ago by cmdcolin
  0

• Add --config argument to add-assembly CLI

  #4622 opened a month ago by cmdcolin
  0

• Connected subfeatures.

  #4599 opened a month ago by Thys3Potgieter
  10

• gz headers with rclone serve

  #4621 opened a month ago by alpapan
  7

• New issue after the fix for "muiName" error in @jbrowse/react-linear-genome-view

  #4614 opened a month ago by yeweiyang96
  4

• Reduce UI scroll jank with heavily loaded synteny views

  #4616 opened a month ago by cmdcolin
  0

• Error "Cannot read properties of undefined (reading 'muiName')" when using `@jbrowse/react-linear-genome-view`

  #4609 opened a month ago by yeweiyang96
  2

• Make Jbrowse CLI tools work reliably in Biocontainers

  #4608 opened a month ago by fubar2
  3

• Content cut off with VariantFeatureWidget - maybe a MUI change to scrolling?

  #4604 opened a month ago by bbimber
  2

• JBrowse issue

  #4601 opened a month ago by PengGYing
  1

• Add ability to change default theme to dark

  #4596 opened 2 months ago by florealcab
  2

• bookmark prevents clicking on regions in cram

  #4579 opened 2 months ago by alpapan
  1

• Cannot load saved .jbrowse files

  #4589 opened 2 months ago by skranz0
  1

• HiC track regression? ReferenceError buffer not defined in 2.15.3?

  #4583 opened 2 months ago by fubar2
  3

• Fix windows desktop build certificate causing failed upgrades

  #4568 opened 2 months ago by cmdcolin
  4

• not important: perhaps support indexed PAF?

  #4577 opened 2 months ago by alpapan
  4

• Error when running text indexing on Windows

  #4581 opened 2 months ago by carolinebridge
  1

• Support PIF format on gui

  #4565 opened 2 months ago by alpapan
  4

• minor: make-pif speed up

  #4576 opened 2 months ago by alpapan
  0

• Error indexing track in JBrowse Desktop due to permissions

  #4570 opened 2 months ago by cmdcolin
  1

• Using jbrowse CLI with no args passed to e.g. add-track produces confusing message with stack trace

  #4575 opened 2 months ago by cmdcolin
  0

• Make a easier to use GUI and CLI for adding synteny tracks

  #4574 opened 2 months ago by cmdcolin
  0

• If displayedRegion is created with negative coordinates, you can run into odd bugs

  #4562 opened 2 months ago by cmdcolin
  2

• Minor bug: "_linehash" in feature details

  #4567 opened 2 months ago by abjanssen
  1

• Closing multiple tracks in a row triggers "double click to zoom in"

  #4559 opened 2 months ago by cmdcolin
  0

• Volvox CRAM being slow on our AWS website for confusing reasons

  #4555 opened 2 months ago by cmdcolin
  4

• JBrowse issue viewing of gencode 44 GTF string length exceeds maximum

  #4522 opened 3 months ago by callumparr
  8

• During release process, binaries can get uploaded to separate release drafts

  #4538 opened 2 months ago by cmdcolin
  0

• Create --skipTracks argument for jbrowse text-index

  #4541 opened 3 months ago by cmdcolin
  0

• Can you update d3-scale, d3-interpolate and d3-color?

  #4507 opened 4 months ago by bbimber
  8

• Allow making linear-genome-view have a certain "set height" instead of unbounded height

  #4526 opened 3 months ago by cmdcolin
  0

• Create concept of "expanding" certain types of discontinuous displayed region boundaries

  #4524 opened 3 months ago by cmdcolin
  0

• Issues modifying the Feature Detail pane to call an ORF ID in a search

  #4520 opened 3 months ago by cjhart-1993
  2

• Specify adapter type through CLI option when adding track

  #4517 opened 3 months ago by kwentine
  0

• Create ctrl+k interface for keyboard shortcuts

  #4514 opened 3 months ago by cmdcolin
  0

• SyntaxError: Unexpected token '<', "<!DOCTYPE "... is not valid JSON

  #4512 opened 3 months ago by MeiDongI
  2

• Unable to load feature tracks in linear syneny view

  #4504 opened 4 months ago by Thys3Potgieter
  3

• Strip default items from session snapshots(?)

  #4503 opened 4 months ago by cmdcolin
  1

• Inconsistent wrong SNP displayed

  #4502 opened 4 months ago by Maarten-vd-Sande
  3

• Allow csi index in @jbrowse/img jb2export

  #4477 opened 4 months ago by jd3234
  6

• Unable to open 'track selector' in synteny view after v2.13.0

  #4500 opened 4 months ago by cmdcolin
  0

• JBrowse issue

  #4490 opened 4 months ago by zmt11
  2

• Error: Failed to fetch

  #4479 opened 4 months ago by zsz1118
  1

• Set a different background color for the searched genomic coordinates

  #4486 opened 4 months ago by cmdcolin
  0

• QuantitativeTrack+LinearWiggleDisplay+WiggleRenderer ignores color setting in config.json

  #4475 opened 5 months ago by heavywatal
  2

• Right click synteny trapezoid->Center on feature changes displayedRegions set

  #4474 opened 5 months ago by cmdcolin
  0