GMOD/jbrowse-components

Issues

• Shade the "intron" skips in RNA-seq reads according to XS/TS/ts tag

  #4673 opened 2 months ago by cmdcolin
  1

• Poorly spaced layout with show soft clipping in some cases

  #4671 opened 2 months ago by cmdcolin
  1

• Fix oclif test suite or migrate away from oclif

  #4666 opened 2 months ago by cmdcolin
  0

• Using jbrowse CLI with no args passed to e.g. add-track produces confusing message with stack trace

  #4575 opened 4 months ago by cmdcolin
  0

• GCContent track empty in v2.17.0

  #4668 opened 2 months ago by cmdcolin
  0

• Local dev mode in chrome on linux can freeze with "blank" tracks somtimes

  #4669 opened 2 months ago by cmdcolin
  1

• Add "copy consensus sequence" command to alignments tracks

  #4665 opened 2 months ago by cmdcolin
  0

• Using "Custom theme" from umd_plugin in volvox config crashes

  #4641 opened 2 months ago by cmdcolin
  0

• Add "Link supplementary reads" type functionality

  #4659 opened 2 months ago by cmdcolin
  1

• Add ability to add a new row onto a existing breakpoint split view

  #4658 opened 2 months ago by cmdcolin
  0

• Use a smarter search box for track searching

  #4655 opened 2 months ago by cmdcolin
  1

• Color by modifications option ignores BAM reverse reads

  #4629 opened 2 months ago by shaperones
  5

• Add support for viewing no_ref CRAM files

  #4644 opened 2 months ago by cmdcolin
  1

• Add ability to get info about the currently mouseover'd position on reads

  #4643 opened 2 months ago by cmdcolin
  0

• CRAM not lossless

  #4637 opened 2 months ago by alpapan
  6

• Reduce UI scroll lag with heavily loaded synteny views

  #4616 opened 3 months ago by cmdcolin
  0

• Hi-C track: normalization and resolution

  #4611 opened 2 months ago by cmdcolin
  0

• Allow configuring default resolution for bigwig files

  #4618 opened 2 months ago by cmdcolin
  1

• Resizing synteny view vertically redraws mouseover without clearing screen

  #4625 opened 2 months ago by cmdcolin
  0

• Add new row to multi-way synteny view

  #4623 opened 3 months ago by cmdcolin
  0

• Add --config argument to add-assembly CLI

  #4622 opened 3 months ago by cmdcolin
  0

• Connected subfeatures.

  #4599 opened 3 months ago by Thys3Potgieter
  10

• gz headers with rclone serve

  #4621 opened 3 months ago by alpapan
  7

• New issue after the fix for "muiName" error in @jbrowse/react-linear-genome-view

  #4614 opened 3 months ago by yeweiyang96
  4

• Error "Cannot read properties of undefined (reading 'muiName')" when using `@jbrowse/react-linear-genome-view`

  #4609 opened 3 months ago by yeweiyang96
  2

• Make Jbrowse CLI tools work reliably in Biocontainers

  #4608 opened 3 months ago by fubar2
  3

• Content cut off with VariantFeatureWidget - maybe a MUI change to scrolling?

  #4604 opened 3 months ago by bbimber
  2

• JBrowse issue

  #4601 opened 3 months ago by PengGYing
  1

• Add ability to change default theme to dark

  #4596 opened 3 months ago by florealcab
  2

• bookmark prevents clicking on regions in cram

  #4579 opened 3 months ago by alpapan
  1

• Cannot load saved .jbrowse files

  #4589 opened 3 months ago by skranz0
  1

• HiC track regression? ReferenceError buffer not defined in 2.15.3?

  #4583 opened 4 months ago by fubar2
  3

• Fix windows desktop build certificate causing failed upgrades

  #4568 opened 4 months ago by cmdcolin
  4

• not important: perhaps support indexed PAF?

  #4577 opened 4 months ago by alpapan
  4

• Error when running text indexing on Windows

  #4581 opened 4 months ago by carolinebridge
  1

• Support PIF format on gui

  #4565 opened 4 months ago by alpapan
  4

• minor: make-pif speed up

  #4576 opened 4 months ago by alpapan
  0

• Error indexing track in JBrowse Desktop due to permissions

  #4570 opened 4 months ago by cmdcolin
  1

• Make a easier to use GUI and CLI for adding synteny tracks

  #4574 opened 4 months ago by cmdcolin
  0

• If displayedRegion is created with negative coordinates, you can run into odd bugs

  #4562 opened 4 months ago by cmdcolin
  2

• Minor bug: "_linehash" in feature details

  #4567 opened 4 months ago by abjanssen
  1

• Closing multiple tracks in a row triggers "double click to zoom in"

  #4559 opened 4 months ago by cmdcolin
  0

• Volvox CRAM being slow on our AWS website for confusing reasons

  #4555 opened 4 months ago by cmdcolin
  4

• JBrowse issue viewing of gencode 44 GTF string length exceeds maximum

  #4522 opened 5 months ago by callumparr
  8

• During release process, binaries can get uploaded to separate release drafts

  #4538 opened 4 months ago by cmdcolin
  0

• Create --skipTracks argument for jbrowse text-index

  #4541 opened 4 months ago by cmdcolin
  0

• Allow making linear-genome-view have a certain "set height" instead of unbounded height

  #4526 opened 5 months ago by cmdcolin
  0

• Create concept of "expanding" certain types of discontinuous displayed region boundaries

  #4524 opened 5 months ago by cmdcolin
  0

• Issues modifying the Feature Detail pane to call an ORF ID in a search

  #4520 opened 5 months ago by cjhart-1993
  2

• Specify adapter type through CLI option when adding track

  #4517 opened 5 months ago by kwentine
  0