Pinned Repositories
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
awesome-jbrowse2
aws_serverless_photo_gallery
graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
logistic_chaos_map
A visualizer for the logistic map, also a demo of rust/wasm+react in a monorepo
mafviewer
A JBrowse plugin to view multiple alignment format (MAF) files
nextjs-appdir-blog
A basic setup for creating a static site/blog using the next 13 "app" directory
oddgenes
A small database of weird gene annotations
technical_oddities
A compilation of short descriptions of tech oddities that are weird, debunked or not
jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
cmdcolin's Repositories
cmdcolin/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
cmdcolin/oddgenes
A small database of weird gene annotations
cmdcolin/aws_serverless_photo_gallery
cmdcolin/graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
cmdcolin/cmdcolin.github.io
Homepage
cmdcolin/dotfiles
My dotfiles
cmdcolin/bam_index_visualizer
cmdcolin/jbrowse-plugin-gwas
cmdcolin/oddbiology
A collection of weird biological phenomena
cmdcolin/clustal-js
cmdcolin/gff-nostream
cmdcolin/interproscan2genome
cmdcolin/ytshuffle
fetches all videos from a channel or channels, and shuffles them
cmdcolin/AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more re
cmdcolin/awesome-pangenomes
A list of software for pangenomics
cmdcolin/emf-js
cmdcolin/figgymsa
cmdcolin/g2p_mapper
cmdcolin/gtf-nostream
cmdcolin/htscodecs
Custom compression for CRAM and others.
cmdcolin/jbrowse-plugin-extra-panel-demo
cmdcolin/jbrowse-plugin-tview
cmdcolin/jest-oclif-test-bug-repro
cmdcolin/msa-viewer-bench
cmdcolin/mui-icons-material-error-repro
cmdcolin/Onyx-Crypto-Exchange-Backend
cmdcolin/rspack-error-repro
cmdcolin/storybook-rsbuild-source-map-error-repro
cmdcolin/Tiberius
deep learning gene finder
cmdcolin/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission