GMOD/bam-js

Issues

• Possible memory optimizations

  #106 opened 4 months ago by cmdcolin
  1

• Typing issues

  #97 opened 3 months ago by tuner
  8

• All tags are stored in lower case, but technically lower case tags are distinct from upper case

  #62 opened 5 months ago by cmdcolin
  3

• htsget auth support

  #86 opened 3 years ago by brainstorm
  7

• Rewrite record class for less lazy loading

  #14 opened 5 months ago by cmdcolin
  2

• Support for Content-Encoding:gzip(?)

  #100 opened a year ago by cmdcolin
  2

• LocalFile is not a constructor

  #93 opened 3 years ago by amijalis
  2

• fetch size limit error with `pairAcrossChr`

  #84 opened 3 years ago by sehilyi
  2

• Htsget unable to fetch header from some endpoints

  #67 opened 4 years ago by cmdcolin
  7

• Add more hydrate / snapshot tests

  #8 opened 3 years ago by cmdcolin
  1

• Large amount of short reads bogs jbrowse down

  #58 opened 5 years ago by cmdcolin
  1

• Missing end position in read mate?

  #83 opened 3 years ago by alexander-veit
  2

• need explanation for usage

  #78 opened 4 years ago by hth4
  5

• Feature sequence is undefined

  #66 opened 4 years ago by alexander-veit
  2

• Wrong negative number values being reported for some tags

  #64 opened 4 years ago by cmdcolin
  0

• CG field

  #6 opened 5 years ago by cmdcolin
  0

• Support BAI index aka BAM index index

  #52 opened 5 years ago by cmdcolin
  1

• add SAM parsing

  #51 opened 5 years ago by cmdcolin
  0

• Not fetching all reads

  #43 opened 5 years ago by cmdcolin
  1

• Avoid large promise.all at end of getRecordsForRange

  #7 opened 6 years ago by cmdcolin
  3

• Investigate split alignment data structures

  #38 opened 6 years ago by cmdcolin
  1

• Port intra-slice merging from tabix

  #34 opened 6 years ago by cmdcolin
  1

• error with local uploaded file

  #31 opened 6 years ago by lidaof
  4

• Merge adjacent blocks code could result in large allocation

  #29 opened 6 years ago by cmdcolin
  2

• Use @gmod/tabix techniques to decode bgzf blocks

  #9 opened 6 years ago by cmdcolin
  2

• Support AN (alternative naming)

  #28 opened 6 years ago by cmdcolin
  0

• question on seq_id of returned feature

  #27 opened 6 years ago by lidaof
  2

• error in getHeader()

  #26 opened 6 years ago by lidaof
  7

• use with ES6

  #25 opened 6 years ago by lidaof
  1

• Add indexCov

  #19 opened 6 years ago by cmdcolin
  1

• expand README

  #23 opened 6 years ago by rbuels
  2

• Add check for incorrect BAI files for larger chromosomes

  #18 opened 6 years ago by cmdcolin
  1

• Add big endianness

  #1 opened 6 years ago by cmdcolin
  2

• Optimize some view as pairs circumstances

  #12 opened 6 years ago by cmdcolin
  0

• add a configurable flag to redispatch and really connect read pairs

  #10 opened 6 years ago by rbuels
  10

• Fix CSI refNameToId resolution

  #2 opened 7 years ago by cmdcolin
  2

• Delay evaluation of bin index until used

  #3 opened 7 years ago by cmdcolin
  1

• Fails to get range when forcing to use pakoUnzip in node and browser

  #4 opened 7 years ago by cmdcolin
  2

• Restructure record fetching with a callback

  #5 opened 7 years ago by cmdcolin
  0