yjx1217
PI @ Sun Yat-sen University Cancer Center (SYSUCC)
Sun Yat-sen University Cancer Center (SYSUCC)Guangzhou, China
Pinned Repositories
BBmap
an archive version of BBmap v39.0
CAP3
a backup version of CAP3
EpiNano_lite
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
NanoTrans
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
RecombineX
A computational framework for tetrad-based genotyping & recombination landscape analysis
RMRB
This is an archive version of old RepBase library (v20170127) for RepeatMasker.
simuG
simuG: a general-purpose genome simulator
Varathon
A scalable variant calling and benchmarking framework supporting both short and long reads.
Yeast_PacBio_2016
yjx1217's Repositories
yjx1217/simuG
simuG: a general-purpose genome simulator
yjx1217/LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
yjx1217/RMRB
This is an archive version of old RepBase library (v20170127) for RepeatMasker.
yjx1217/NanoTrans
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
yjx1217/Varathon
A scalable variant calling and benchmarking framework supporting both short and long reads.
yjx1217/RecombineX
A computational framework for tetrad-based genotyping & recombination landscape analysis
yjx1217/Yeast_PacBio_2016
yjx1217/BBmap
an archive version of BBmap v39.0
yjx1217/CAP3
a backup version of CAP3
yjx1217/EpiNano_lite
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
yjx1217/EvoSeq_RNA
An in-house bioinformatic framework for bulk RNA-seq analysis
yjx1217/gapfiller
GapFiller
yjx1217/GATK3_Archive
An archive version of 3.6-6 for compatibility support only ( license restricted for commercial use)
yjx1217/JAFFA
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
yjx1217/Maker3beta_archive
maker-3.00.0-beta.tar.gz
yjx1217/REannotate_LongQueryName
A slightly modified version of the program REannotate (http://www.bioinformatics.org/reannotate/) to support for longer query names.
yjx1217/sga
de novo sequence assembler using string graphs
yjx1217/SLAMseq
A customized SLAM-seq analysis pipeline
yjx1217/SupplementaryData_for_Asymmetron_CNE_paper_2016
Supplementary Data for Asymmetron CNE paper (2016)
yjx1217/try_git