Pinned Repositories
AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Brassica_homoeologous_exchanges
CAU-T2T-Sheep
A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0
myscripts
Pear_Haplotype_Genome
Codes for pear haplotype genome and pangenome graph construction
small-contig-reassignment
To reassign small contigs after manual grouping by small contig removal, rescue & optimization
sorghum_T2T
The codes to assemble two sorghum cultivars
TomatoSuperPanGenome
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
Watermelon-pangenome
zgtools
zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
linyuiz's Repositories
linyuiz/zgtools
zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
linyuiz/myscripts
linyuiz/Pear_Haplotype_Genome
Codes for pear haplotype genome and pangenome graph construction
linyuiz/small-contig-reassignment
To reassign small contigs after manual grouping by small contig removal, rescue & optimization
linyuiz/sorghum_T2T
The codes to assemble two sorghum cultivars
linyuiz/TomatoSuperPanGenome
Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
linyuiz/Watermelon-pangenome
linyuiz/AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
linyuiz/Brassica_homoeologous_exchanges
linyuiz/CAU-T2T-Sheep
A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0
linyuiz/BSLtool
Build satellite library
linyuiz/CAU-T2T-Goat
linyuiz/chicken-T2T
Scripts that used in our chicken T2T manuscript.
linyuiz/PlotHiC
The tool is employed for the visualisation of genome-wide contact heatmaps and constitutes an extension of AutoHiC.
linyuiz/primate_sex_chromosome